Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1087 102 7e-17 seq5294 91.5 1e-13 >seq1087 Length=202632 Score = 102 bits (112), Expect = 7e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 29824 TAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29883 |||| || || || ||||| ||||| || || || ||||| | || || ||||| || Sbjct 83332 TAGAGATGCGCATCGCCCAGCGTGTGAACGAAATCACCCGGCTGCAGACCCGTGACCTGC 83391 Query 29884 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATG 29943 |||| |||| || || || | ||| ||||| || || || || ||||| || Sbjct 83392 GCCACCATGAGGGTCAGCAGGGCATAGGATGCGATATTGAACGGCACGCCGAGAAAGATA 83451 Query 29944 TCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACAC 30003 || | || | |||||||||||| || || |||| ||||||| |||||| ||||| || Sbjct 83452 TCGGCGGAGCGCTGGTAGAGCTGGCAGGAAAGCTTTCCGTCGGCCACGTAGAACTGGAAC 83511 Query 30004 ATGGTGTGGCACGGAGGAAGAGCCAT 30029 | | |||||| || || || ||||| Sbjct 83512 AGGCAGTGGCAGGGCGGCAGCGCCAT 83537 >seq5294 Length=478 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 29830 TGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATC 29889 || ||||| |||||||| || || || || ||| | ||||||||| | || |||| | Sbjct 394 TGCGCGTCGCCCAGGGTATGCACGAAGTCGCCCACGCCCAGCCCGGTGGCCTGCGCCACC 335 Query 29890 ATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCC 29949 |||| ||||| || | ||||||||||||||| || || || || || ||||| || Sbjct 334 ATGTGGGTGAGCAGTGCGTAGCTGGCGATGTTGAACGGCACGCCCAGGAAGATGTCGCCG 275 Query 29950 GACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTG 29999 | |||||| | ||| || ||||| ||||| |||||| ||||| Sbjct 274 CTGCGCTGGTACAACTGGCAGCTGAGCTTGCCGTCCACCACGTAGAACTG 225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408550957278686