Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_017972.1 Length=280538 Score E Sequences producing significant alignments: (Bits) Value seq8099 122 2e-22 seq11648 96.9 6e-15 >seq8099 Length=224 Score = 122 bits (134), Expect = 2e-22 Identities = 127/167 (76%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 23056 AACTCCAGAGTAAGCGAGCCTTTCCATTCTGGTTCCAGCGGCGTGACGTTTACGATGATG 23115 |||||||| || | |||||| |||||| ||||| | ||| || ||||| ||||||||| Sbjct 3 AACTCCAGCGTCACATAGCCTTCCCATTCAGGTTCGAACGGGGTCACGTTGACGATGATG 62 Query 23116 CCGCAACGCGCATACGTCGATTTGCCGAGGCAGATAACTAATACGTCACGCGGAATGTTG 23175 ||||| || ||||| |||||||||||||||||||| || || | ||||| ||| | Sbjct 63 CCGCAGCGTGCATAGGTCGATTTGCCGAGGCAGATCGTCAACACATTGCGCGGGATGCGG 122 Query 23176 AAGTGTTCCGGCGTGTTTGCCAGTGCGAAACTGTTCGGCGGAATGAT 23222 |||| ||| || ||||| |||||| ||| ||||| ||||| Sbjct 123 AAGTATTCGATGGTACGTGCCAATGCGAACGAGTTAGGCGGGATGAT 169 >seq11648 Length=415 Score = 96.9 bits (106), Expect = 6e-15 Identities = 193/285 (68%), Gaps = 11/285 (4%) Strand=Plus/Minus Query 23074 CCTTTCCATTCTGGTTCCAGCGGCGTGACGTTTACGATGATGCCGCAACGCGCATACGTC 23133 |||| ||| || || |||||||| || || || |||||||||||||| ||||| || || Sbjct 396 CCTTCCCACTCCGGCTCCAGCGGGGTCACATTGACGATGATGCCGCAGCGCGCGTAGGTG 337 Query 23134 GATTTGCCGAGGCAGATAACTAATACGTCACGCGGAATGTTGAAGTGTTCCGGCGTGTTT 23193 ||||| ||||| | || | ||| ||||| ||| ||||| ||| ||| Sbjct 336 CTCTTGCCCAGGCACACCACCAGGGTGTCGCGCGGGATGCGGAAGTACTCCACGGTGCGC 277 Query 23194 GCCAGTGCGAAACTGTTCGGCGGAATGAT-CAGGCCTTGGCCGTTTGGAACGTGCTTCGT 23252 ||||| ||||| ||||| ||||||||||| || | | | || ||| | | Sbjct 276 GCCAGCGCGAAGCTGTTGGGCGGAATGATGCACTCGTCGCCC-------ACGATGTCC-- 226 Query 23253 AACGAAATTGTCTTCGGTGAAATTCTTTGGATCGACAACCGCGTTATTCAGGTTGGTGAA 23312 ||||| || | | ||| | ||| || ||||| | | | || | ||||||||| Sbjct 225 -ACGAAGCTGCCCGGGTCGAAGTGCTTGGGGTCGACGATGGTGGAGTTGATGTTGGTGAA 167 Query 23313 AACCTTGAATTCGTTACCGCAACGAATATCGTAGCCGTAGCTGGA 23357 |||||||| ||| ||| || | || |||||||||||||| Sbjct 166 CACCTTGAACTCGCGCGAGCAGCGCACGTCATAGCCGTAGCTGGA 122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 897443455030560