Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_017985.1 Length=40128 Score E Sequences producing significant alignments: (Bits) Value seq3951 737 0.0 seq2342 100 7e-17 seq7676 86.0 2e-12 >seq3951 Length=514 Score = 737 bits (816), Expect = 0.0 Identities = 470/511 (92%), Gaps = 0/511 (0%) Strand=Plus/Plus Query 20919 GACTGTGTGTTATGGCCACGTCGGAAAAGACATCATGCTCGGTAAAACGTATACCGAAGC 20978 |||||| ||| | || || ||||||||||||||||||||||||||||||||| |||| Sbjct 4 GACTGTATGTCACGGGCATACAGGAAAAGACATCATGCTCGGTAAAACGTATACCAAAGC 63 Query 20979 AGAATGCGAAGCCCTCCTGAATAAAGACCTTGCCACGGTCGCCAGACAAATTAACCCGTA 21038 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 64 AGAATGCAAAGCCCTCCTGAATAAAGACCTTGCCACGGTCGCCAGACAAATTAACCCGTA 123 Query 21039 CATCAAAGTCGATATACCGGAAACAACGCGCGGCGCTCTTTATTCGTTCGTCTATAACGT 21098 ||| ||||| |||||||||||||||||||||||||||||||| |||||||| || ||||| Sbjct 124 CATAAAAGTTGATATACCGGAAACAACGCGCGGCGCTCTTTACTCGTTCGTTTACAACGT 183 Query 21099 GGGCGCAGGCAATTTCAGAACATCGACGCTTCTTCGCAAAATCAACCAGGGCGATATCAA 21158 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 184 GGGCGCTGGCAATTTCAGAACATCGACGCTTCTTCGCAAAATAAACCAGGGCGATATCAA 243 Query 21159 GGGCGCATGTGACCAGCTACGTCGCTGGACATACGCTGGCGGTAAGCAATGGAAAGGGCT 21218 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 244 AGGCGCATGTGATCAGCTACGTCGCTGGACATATGCTGGCGGTAAGCAATGGAAAGGTCT 303 Query 21219 GATGACTCGCCGTGAGATTGAGCGTGAAGTCTGTTTGTGGGGGCAGCAATGAGCAGAGTA 21278 |||||||| |||||||||||||||||| ||||||||||||| ||||||||| ||||||| Sbjct 304 CATGACTCGTCGTGAGATTGAGCGTGAAATCTGTTTGTGGGGTCAGCAATGAACAGAGTA 363 Query 21279 ACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAAT 21338 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 364 ACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAAT 423 Query 21339 CATTACCGTGATAATGCAATCGCCTACAAAGAGCAGCGCGATAAAAAAGTCAGTGAACTG 21398 |||||||||||||| || || ||||||||| |||||||| ||||| | ||| |||||| Sbjct 424 CATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAACTG 483 Query 21399 AAGCAGGCGACCGCCACCATTACTGACATGC 21429 |||| ||||| ||| | ||||||||||||| Sbjct 484 AAGCTGGCGAACGCGGCAATTACTGACATGC 514 >seq2342 Length=4104 Score = 100 bits (110), Expect = 7e-17 Identities = 69/78 (88%), Gaps = 4/78 (5%) Strand=Plus/Plus Query 4835 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGAGTACGAG 4894 ||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||| Sbjct 1979 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGTGCGAG 2038 Query 4895 GATG----TTATTGCTGC 4908 |||| | |||||||| Sbjct 2039 GATGCTGTTCATTGCTGC 2056 >seq7676 Length=607 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 3025 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAA 3076 |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 49 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128267613593560