Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_018275.1 Length=39783 Score E Sequences producing significant alignments: (Bits) Value seq3951 551 1e-152 seq4011 105 2e-18 seq2342 105 2e-18 seq2271 91.5 4e-14 >seq3951 Length=514 Score = 551 bits (610), Expect = 1e-152 Identities = 337/358 (94%), Gaps = 0/358 (0%) Strand=Plus/Plus Query 37429 ATGGACTGTATGCCACGGACACACCGGAAAAGACATCATGCTCGGTAAAACGTATACCGA 37488 |||||||||||| ||||| || || ||||||||||||||||||||||||||||||||| | Sbjct 1 ATGGACTGTATGTCACGGGCATACAGGAAAAGACATCATGCTCGGTAAAACGTATACCAA 60 Query 37489 AGCAGAATGCAAAGCCCTCCTGAATAAAGACCTTGCCACGGTCGCCAGACAAATTAACCC 37548 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AGCAGAATGCAAAGCCCTCCTGAATAAAGACCTTGCCACGGTCGCCAGACAAATTAACCC 120 Query 37549 GTACATCAAAGTCGATATACCGGAAACAACGCGCGGCGCTCTTTACTCGTTCGTCTATAA 37608 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || || Sbjct 121 GTACATAAAAGTTGATATACCGGAAACAACGCGCGGCGCTCTTTACTCGTTCGTTTACAA 180 Query 37609 CGTGGGCACAGGCAATTTCAGAACATCGACGCTTCTTCGCAAAATAAACCAGGGCGATAT 37668 ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CGTGGGCGCTGGCAATTTCAGAACATCGACGCTTCTTCGCAAAATAAACCAGGGCGATAT 240 Query 37669 CAAGGGCGCATGTGATCAGCTACGGCGCTGGACATACGCTGGCGGTAAGCAATGGAAAGG 37728 ||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 241 CAAAGGCGCATGTGATCAGCTACGTCGCTGGACATATGCTGGCGGTAAGCAATGGAAAGG 300 Query 37729 GCTGATGACCCGTCGTGAGATTGAGCGTGAAGTCTGTTTGTGGGGGCAACAATGAGCA 37786 || ||||| ||||||||||||||||||||| ||||||||||||| || |||||| || Sbjct 301 TCTCATGACTCGTCGTGAGATTGAGCGTGAAATCTGTTTGTGGGGTCAGCAATGAACA 358 Score = 161 bits (178), Expect = 3e-35 Identities = 100/107 (93%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 37882 TAACCGCGATTATCTCCGCTCTGATTATCTGCATCATCGTCTGTCTGTCATGGGCTGTTA 37941 ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| Sbjct 362 TAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTA 421 Query 37942 ATCATTACCGTGATAACGCCATCGCCTACAAAGAGCAGCGCGATAAA 37988 |||||||||||||||||||||| ||||||||| |||||||| ||| Sbjct 422 ATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAA 468 >seq4011 Length=1784 Score = 105 bits (116), Expect = 2e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 30569 GGAGCATCGCGTGGCAGAACTCGACGATGGCTACACCCGGACTGCAAATACACTGCTGGA 30628 ||||| ||||||||||| ||||||||||| || || || | ||||||| ||||||| Sbjct 1632 GGAGCGGCGCGTGGCAGATCTCGACGATGGTTATACGCGCATTGCAAATGAGTTGCTGGA 1573 Query 30629 AGCTGTCATGCTTTCTGGGCTTACTCAACATCAGCTACTGATTGTTATGGCTGTGTGGCG 30688 |||||| ||||| | || | || || || ||||| ||| | | ||||||| ||| Sbjct 1572 AGCTGTGATGCTGGCCGGATTAACACAGCACCAGCTTCTGGTCTTCCTGGCTGTCATGCG 1513 Query 30689 CAAGACATACGGTTATAACaaaaaaaTAGATTGGATCGGAAATGAACAGTTCGCTGAACT 30748 ||| ||||| || | ||| |||| | | |||||| | | || || || | | ||| | Sbjct 1512 CAAAACATATGGCTTTAATAAAAGACTGGATTGGGTGAGCAACGAGCAACTTTCCGAATT 1453 Query 30749 CACTGGCATGGCACCAACCAAATGTTCTACCGCCAAAAACG 30789 || || || || | ||| |||||| | || |||| || Sbjct 1452 GACCGGGATATTGCCGAACAAGTGTTCTGCTGCAAAAAGCG 1412 >seq2342 Length=4104 Score = 105 bits (116), Expect = 2e-18 Identities = 78/90 (87%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 22060 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGAGTGCGAG 22119 ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1979 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGTGCGAG 2038 Query 22120 GATTGTTATTCAGTGCCGATATTTACCTTT 22149 || || | |||| ||| | ||| || ||| Sbjct 2039 GA-TGCTGTTCATTGCTGCTATACACTTTT 2067 >seq2271 Length=37941 Score = 91.5 bits (100), Expect = 4e-14 Identities = 58/63 (92%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 24939 TCTTTGGTTTCCAGCTCATCCAGCAGCGCCAGCATGGTGGCGTGGTTGGCTGCGGCGATA 24998 ||||||| |||||||||||||||||||||||||| ||||||| | ||||||||||||||| Sbjct 17488 TCTTTGGCTTCCAGCTCATCCAGCAGCGCCAGCACGGTGGCGGGTTTGGCTGCGGCGATA 17429 Query 24999 AAT 25001 || Sbjct 17428 TAT 17426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127163789031580