Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_018279.1 Length=49116 Score E Sequences producing significant alignments: (Bits) Value seq3951 719 0.0 seq2342 105 2e-18 >seq3951 Length=514 Score = 719 bits (796), Expect = 0.0 Identities = 466/511 (91%), Gaps = 0/511 (0%) Strand=Plus/Plus Query 46406 GACTGTGTGTTATGGCCACACCGGAAAAGACATCATGCCTGGTAAAACGTATACCGAAGC 46465 |||||| ||| | || || || |||||||||||||||| ||||||||||||||| |||| Sbjct 4 GACTGTATGTCACGGGCATACAGGAAAAGACATCATGCTCGGTAAAACGTATACCAAAGC 63 Query 46466 AGAATGCAAATCCCTCCTGAATAAAGACCTTGTCACTGTCGCCAGACAAATTAACCCGTA 46525 |||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||| Sbjct 64 AGAATGCAAAGCCCTCCTGAATAAAGACCTTGCCACGGTCGCCAGACAAATTAACCCGTA 123 Query 46526 CATCAAAGTCGATATACCGGAAACAACGCGAGGCGCCCTTTACTCGTTCGTCTACAACGT 46585 ||| ||||| |||||||||||||||||||| ||||| |||||||||||||| |||||||| Sbjct 124 CATAAAAGTTGATATACCGGAAACAACGCGCGGCGCTCTTTACTCGTTCGTTTACAACGT 183 Query 46586 GGGCGCAGGTAATTTCAGAACATCGACGCTTCTTCGCAAAATAAATCAGGGTGATATCAA 46645 |||||| || ||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 184 GGGCGCTGGCAATTTCAGAACATCGACGCTTCTTCGCAAAATAAACCAGGGCGATATCAA 243 Query 46646 AGGCGCATGTGACCAGCTACGTCGCTGGACATACGCTGGCGGTAAGCAATGGAAAGGGCT 46705 |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 244 AGGCGCATGTGATCAGCTACGTCGCTGGACATATGCTGGCGGTAAGCAATGGAAAGGTCT 303 Query 46706 GATGACTCGCCGTGAGATTGAGTGTGAAGTCTGTTTGTGGGGGCAGCAATGAGCAGAGTA 46765 |||||||| |||||||||||| ||||| ||||||||||||| ||||||||| ||||||| Sbjct 304 CATGACTCGTCGTGAGATTGAGCGTGAAATCTGTTTGTGGGGTCAGCAATGAACAGAGTA 363 Query 46766 ACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAAT 46825 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 364 ACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAAT 423 Query 46826 CATTACCGTGATAATGCAATCGCCTACAAAGAGCAGCGCGATAAAAAAGTCAGTGAACTG 46885 |||||||||||||| || || ||||||||| |||||||| ||||| | ||| |||||| Sbjct 424 CATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAACTG 483 Query 46886 AAGCAGGCGACCGCCACCATTACTGACATGC 46916 |||| ||||| ||| | ||||||||||||| Sbjct 484 AAGCTGGCGAACGCGGCAATTACTGACATGC 514 >seq2342 Length=4104 Score = 105 bits (116), Expect = 2e-18 Identities = 72/79 (91%), Gaps = 3/79 (4%) Strand=Plus/Plus Query 27830 ATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGAGCGCG 27889 ||||||||||||||||||||||||||||||||||||||||||||||||| || || ||| Sbjct 1977 ATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGTGCG 2036 Query 27890 AGGAT--TGTT-ATTGCTG 27905 ||||| |||| ||||||| Sbjct 2037 AGGATGCTGTTCATTGCTG 2055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157024643051752