Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_018846.1 Length=60894 Score E Sequences producing significant alignments: (Bits) Value seq3933 443 8e-120 seq2271 360 7e-95 seq2342 176 2e-39 seq10411 127 8e-25 >seq3933 Length=4962 Score = 443 bits (490), Expect = 8e-120 Identities = 305/345 (88%), Gaps = 0/345 (0%) Strand=Plus/Minus Query 9755 CCATTGTTCTCCAAATACAAAACCAATTTCCGCCAGTGCTTCGTCCATTTTGTCGATGAA 9814 |||||| || |||||||||||||||||||| |||||||| ||||||||||| |||||||| Sbjct 4930 CCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAA 4871 Query 9815 CTCCGGCACCATCTCATCAAAACTCGCCATGTACTTTTCATCCCGCTCGACCACGACATA 9874 ||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 4870 CTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGCTCAACCACGACATA 4811 Query 9875 ATGCAGGCCTTCACGCTTCATGCGTGGGTCGTAGTTGGCGAAGTACCAGGCGTCCTTGTC 9934 ||||||||||||||||||||| |||||||| |||||||| ||||||||||| || || Sbjct 4810 ATGCAGGCCTTCACGCTTCATTCGTGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCG 4751 Query 9935 TGTAACCCACATGCTGAATTGCACCTGGGCCATGTAAGCAGGCTTGATAGCGTCAAAGCC 9994 || |||||||||||| | |||||||||||||||||||| | ||| || || || || || Sbjct 4750 CGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTTATGGCCTCGAAACC 4691 Query 9995 GCCAAGCCGGAATTTCATGAAGTCGCGGGAAGTAAAAGGGCATTTAAGCTCAAGACCGTT 10054 || ||||||||||||||||| || ||||| ||||| |||||||| || ||||| ||||| Sbjct 4690 ACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTTCAAGGCCGTT 4631 Query 10055 ACCGTCGCTGCATAAACCGTCGGGAGAGCAGGCGGTGCGCATGCT 10099 ||||| ||||||||||| ||||||||||||||||||||||| || Sbjct 4630 GCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATACT 4586 Score = 226 bits (250), Expect = 1e-54 Identities = 204/254 (80%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 10178 GTATTGCTTTCCCCATGCGAGCGACTTAGCGTTAACTTCCGGTGCCACGCCAGTACAAAC 10237 ||| || |||||||| || |||| |||||| ||||||||||| ||||| || || ||||| Sbjct 4536 GTACTGTTTTCCCCAGGCCAGCGCCTTAGCATTAACTTCCGGAGCCACACCGGTGCAAAC 4477 Query 10238 TTCAGCCAGCAGGGTGTGGAAGTATGACATTTTTGTATCAGGCCATTTGCTGCCGGAACG 10297 ||||||||||||||||||||||| |||||||| | |||||||| || | || || || Sbjct 4476 CTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCTTTCCTGAGCG 4417 Query 10298 TGGCTTTGCTATCACATTGTGAACTTCTGAAGCAGTGATAACACCGAGTCTCAGCTTGTG 10357 |||||||||||||| ||||||||||||||||| ||||| || ||||| | | ||||| Sbjct 4416 GGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCCGTAATTTGTG 4357 Query 10358 CCATCCATCATCGCCCTGGTCGA-GGCTGGTAATATCCACGCCAGTTCGCTGGAGAATAA 10416 |||| ||||||| ||||| |||| ||| | | || | || || ||||| || |||| Sbjct 4356 CCATGCATCATCCCCCTGTTCGACAGCT-CTCACGTCGATCCCGGTACGCTGCAGGATAA 4298 Query 10417 TTTCTGGTGTCATG 10430 | || ||||||||| Sbjct 4297 TGTCCGGTGTCATG 4284 >seq2271 Length=37941 Score = 360 bits (398), Expect = 7e-95 Identities = 396/524 (76%), Gaps = 5/524 (1%) Strand=Plus/Plus Query 2994 CGCATTGGTTACCCCATACATCAAATCCATGCGAGGTGTGGCGGGCGAACAGTTCTATCC 3053 |||| ||||| ||||| || ||||| |||||||| | ||||||||||| || || || | Sbjct 9642 CGCACTGGTTTCCCCAAACGTCAAACCCATGCGACGACTGGCGGGCGAATAGCTCGATGC 9701 Query 3054 GGGGAACATCGCCAAGAAGTTGCACAAGCTTTTCTCGAGCCATATCCGGCTTGCGGGAGT 3113 | || ||||||||||| | ||||| ||||| |||| || ||||||||||| |||| Sbjct 9702 GCGGCACATCGCCAAGCAACTGCACCAGCTTCTCTCTGATCACGTCCGGCTTGCGCGAGT 9761 Query 3114 GATCAAGGCGCGGTGCAGTGA-ATGACTGGATTATTCCGGCGTTAATGCGTTCGGGCAGA 3172 || |||||||| || |||| ||| |||| || |||| ||||| | ||||| Sbjct 9762 TCTCCAGGCGCGGCGCCGTGACATG-CTGGCAGATCGAAGCGTCCATGCGCGCCGGCAGT 9820 Query 3173 TTTCCTTTCACTGCAAAAAGGCAGTCTTCGCTGTTAGCGCGAGTGGTGCTACCCATACCC 3232 || || ||| ||||| || |||||||||||||| || || || || ||||| || Sbjct 9821 TTCCCGCGCACCGCAAACAGACAGTCTTCGCTGTTCGCCCGGGTCATGTGTCCCATGCCG 9880 Query 3233 ATGACCAGCTTGTCGGTCTGTCTTTTCCCGCATTTGTTCCAGGTTAATCCTTTCATCGTC 3292 ||| | ||| | | || | ||| ||||| |||||| ||||| ||||||||| Sbjct 9881 ATGGCGCTGTTGCCTTTGTGCTTATTCGT---TTTGTGCCAGGTGAATCCCTTCATCGTC 9937 Query 3293 ACCAGACGAAAGCCCCACGCTTCTACAACCTTCAATGCTTCAAGTGGTTGTGTAGGCACC 3352 | ||| ||||| ||||||||||| | ||||||||| ||||||| || ||||| || ||| Sbjct 9938 ATCAGGCGAAATCCCCACGCTTCGATAACCTTCAACGCTTCAATCGGCTGTGTTGGAACC 9997 Query 3353 CACCACATAGACAACAGGCAATTATCGGCTGCCAGTTCCCATACCGGGAGGCGGCAGATA 3412 |||||||||| || |||||||| ||||| ||||| ||||| || || ||||||||||| Sbjct 9998 CACCACATAGCCAGCAGGCAATCTTCGGCAGCCAGATCCCACACAGGCAGGCGGCAGATG 10057 Query 3413 TCCAGAAGACTCATGACCGGATATTTAAAACTTGCACCGCGTTGACCATCGGTTGCTTTG 3472 ||||| | |||| |||||||| || || | || ||||| | || |||| ||||||| Sbjct 10058 TCCAGCACGTTCATAACCGGATACTTGAAGCCGGCGCCGCGCTCGCCGTCGGCTGCTTTG 10117 Query 3473 TCGCGGAATGTCCAGGGGGGATCTGCGTAAATGAGGGTGTATTT 3516 || ||| || ||| || || |||||||||||||| |||||||| Sbjct 10118 TCACGGTATACCCAAGGCGGGTCTGCGTAAATGAGAGTGTATTT 10161 >seq2342 Length=4104 Score = 176 bits (194), Expect = 2e-39 Identities = 109/117 (93%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 9755 CCATTGTTCTCCAAATACAAAACCAATTTCCGCCAGTGCTTCGTCCATTTTGTCGATGAA 9814 |||||| || |||||||||||||||||||| |||||||| ||||||||||| |||||||| Sbjct 3988 CCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAA 4047 Query 9815 CTCCGGCACCATCTCATCAAAACTCGCCATGTACTTTTCATCCCGCTCGACCACGAC 9871 ||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||| Sbjct 4048 CTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGCTCAACCACGAC 4104 >seq10411 Length=590 Score = 127 bits (140), Expect = 8e-25 Identities = 140/179 (78%), Gaps = 13/179 (7%) Strand=Plus/Plus Query 31225 TGCGCCGTATCGTCGCCGTATTCCCGCATTAACAGAGACTGCAGCC--ACC-----TTA- 31276 ||||| ||||||||||||||||||||||||||| ||| | |||| || || Sbjct 331 TGCGCTGTATCGTCGCCGTATTCCCGCATTAACCATGACCGTAGCCCGACGGGGAATTCC 390 Query 31277 -TCTGCGTGAGTGTGCGGGGATAATCAAAAACGATGCACACCGGGTTTTCTCATTTTTCA 31335 |||||||||||||||||| ||||||||||||||||||||||||||||| | | | | Sbjct 391 TTCTGCGTGAGTGTGCGGGAATAATCAAAAACGATGCACACCGGGTTTT-ACTGTGCTGA 449 Query 31336 CGAGATGGGAGCGATTTCCCGCGAAGCCGCCTGTCCGGTGCGGTGGTGGAAGAAACCGG 31394 | ||| | || | || ||| | || ||| | ||||||||| |||||||||||||||| Sbjct 450 C-AGA-CGCAG-GGTTACCCTCATAGTCGCTTTTCCGGTGCGATGGTGGAAGAAACCGG 505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194708253750304