Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq1310 107 4e-18 seq426 93.3 1e-13 >seq1310 Length=146132 Score = 107 bits (118), Expect = 4e-18 Identities = 288/436 (66%), Gaps = 16/436 (4%) Strand=Plus/Plus Query 150359 ATTCAGATTCTTTCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTT 150418 || ||||| || ||||| | ||||||||| ||| | ||| |||| ||||| || || Sbjct 57537 ATCCAGATCCTGTCTCGCAGAACCAAAAACAATCCTATTTTAATTGGGGAACCCGGAGTA 57596 Query 150419 GGTAAAACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCC--AG 150476 ||||||||| || | || ||| | || | ||| ||| || ||||| || || Sbjct 57597 GGTAAAACAGCTATTGCCGAGGGAATTGCTTTCAGGATCATTAAAGGCGATGTACCGGAG 57656 Query 150477 ATTCTATGAAAGATGTTGAAATTCTTTCTT---TGAATATGGGTGCATTTACTGCTGGTA 150533 | ||| | |||| | ||| | ||| || || | |||||||| | | ||| ||| Sbjct 57657 AATCT-TAAAAG----TAAAACTGTTTATTCCCTGGACATGGGTGCTCTCATTGCGGGTG 57711 Query 150534 CTAAGTATCGTGGTGAATTCGAAGAACGTGTAGACAATTTGCTACAAGAACTAAAAGAAC 150593 | || || |||||||| || ||| | || | | | ||||| | | || Sbjct 57712 CGAAATACAAAGGTGAATTTGAGGAAAGATTAAAAGCCGTCGTTAAAGAAGTCAGCCAAA 57771 Query 150594 GCGATG---ATGTTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGA 150650 |||||| || ||||| |||| || ||||| || ||||| || | |||||||||| Sbjct 57772 GCGATGGAGATATTATTTTGTTTATTGATGAGATTCATACCCTTGTTGGTGCTGGTGGC- 57830 Query 150651 CTGGCGGCGGTTCTTTGGATATGAGCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAA 150710 || | ||| | ||||| ||||| ||||||||||| || | | || ||| Sbjct 57831 --GGTGAAGGTGCAATGGATGCCGCAAATATTTTAAAACCTGCACTGGCCAGAGGAGAAC 57888 Query 150711 TTCGTGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAG 150770 | | | || || || ||||| |||||||||| ||| | ||||||||||| || Sbjct 57889 TGAGGGCTATTGGGGCGACAACACTGGATGAATATCAGAAATATCTTGAAAAAGATAAAG 57948 Query 150771 CACTACAGCGTCGTTT 150786 | || |||||||||| Sbjct 57949 CCCTGGAGCGTCGTTT 57964 >seq426 Length=230632 Score = 93.3 bits (102), Expect = 1e-13 Identities = 341/518 (66%), Gaps = 32/518 (6%) Strand=Plus/Plus Query 150310 AGGTAAACTTGATCCACTAATTGGTCGCGAAACTGAACTTGATGATCTAATTCAGATTCT 150369 ||| ||| | |||||| | ||||| || || ||| || | || | |||||| | Sbjct 59516 AGGAAAATTAGATCCAGTTATTGGACGTGATGAAGAAATTCGTCGCGTATTGCAGATTTT 59575 Query 150370 TTCTCGTAAAACCAAAAAGAATGG--TGCGTTAGTTGGTGAACCAGGTGTTGGTAAAACA 150427 |||||| ||||||||| ||| ||| ||| ||||||| || || ||||||||||| Sbjct 59576 GACTCGTAGAACCAAAAACAATCCAATGC-TTA-TTGGTGAGCCCGGAGTTGGTAAAACG 59633 Query 150428 CAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATGAAA 150487 || | || || ||||| || | || | | || |||||||| || | ||| Sbjct 59634 GCTATTGCCGAAGGTTTAGCGCATAGAATTGTAGACGGCGATGTTCCGGAAAACTTAAAA 59693 Query 150488 GATGTTGAAATTC--TTTCT--TTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCG 150543 ||| || || ||||| || ||||||| || || | ||| || | || | Sbjct 59694 GAT----AAGATCGTTTTCTCATTAGATATGGGAGCTTTGATTGCCGGAGCAAAATTCAA 59749 Query 150544 TGGTGAATTCGAAGAACGTGTAGACAAT---TTGCTACAAGAACTAA------AAGAACG 150594 || ||||| ||||||||| | | ||| ||| || ||||| | | ||| | Sbjct 59750 AGGAGAATTTGAAGAACGTTT--AAAATCGGTTG-TAAAAGAAGTTACCGCTGCCGAAGG 59806 Query 150595 CGATGATGTTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTGG 150654 |||| || ||| |||| |||||||| || ||||| || | || || |||| || || Sbjct 59807 CGAT-ATTGTAT--TGTTTATCGATGAGATTCATACCCTTGTAGGAGCGGGTG-GA--GG 59860 Query 150655 CGGCGGTTCTTTGGATATGAGC-AATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTC 150713 | || | ||||| ||| ||||| |||||||| ||| | | || || || || Sbjct 59861 TGAAGGCGCGATGGAT-GCAGCGAATATCTTAAAACCGGCTTTGGCGCGTGGAGAGCTTA 59919 Query 150714 GTGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCAC 150773 | | || ||||| ||||| | |||||||||| ||| | |||||||||| ||| | Sbjct 59920 GAGCAATTGGTGCTACAACTTTAGATGAATATCAAAAATATTTTGAAAAAGACAAAGCGC 59979 Query 150774 TACAGCGTCGTTTCATGAAGGTTGATATTGTTGAACCG 150811 | | | |||||| ||| ||| |||| ||| ||| Sbjct 59980 TTGAAAGACGTTTCCAGAAAGTTTTAATTGATGAGCCG 60017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147393637736236