Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq4225 136 7e-27 seq1252 122 2e-22 seq446 84.2 4e-11 >seq4225 Length=585 Score = 136 bits (150), Expect = 7e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 169212 GCCAAGTTGTCCGGCAGTTGCGAAGCAGTCAGCGTGGTGCGCACAGCCATCATGCCGCAG 169271 |||| |||||| ||||| | | || ||||||||||||||| ||| |||||||||| Sbjct 46 GCCAGGTTGTCGGGCAGGTCCTCGGCGCGCAGCGTGGTGCGCACCGCCGCCATGCCGCAG 105 Query 169272 CCGATGTCGACGCCGACCGCGTACGGGATCACCGCATCCTTGGTCGGGATCACCGAACCA 169331 |||||||| |||||||||||| ||| || | ||| | ||| ||||||||||| || Sbjct 106 CCGATGTCCACGCCGACCGCGGCCGGAATGATCGCGCCGCGGGTAGGGATCACCGAGCCC 165 Query 169332 ACGGCTGCGCCGTACCCGGCGTGGACGTCGGGCATCACCGCGACGTGCTTGAACACGAAC 169391 |||| || || | || |||| ||||| ||||||||||| || | | |||||| Sbjct 166 ACGGTGGCCCCTTTGCCTACGTGCACGTCCGGCATCACCGCCACCCACGGGCCGACGAAC 225 Query 169392 GGCAGCCCGGCGACGTTG 169409 |||| | |||||| |||| Sbjct 226 GGCACCGCGGCGATGTTG 243 >seq1252 Length=525 Score = 122 bits (134), Expect = 2e-22 Identities = 118/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 168522 CCGCGCACGATGAACGACTTGGCGCCCATCGAACCCGGAATGATGCCGAGTTCGTCCTTC 168581 |||||||||||||| |||||||||||| ||||||||||| || | ||| |||| Sbjct 523 CCGCGCACGATGAAACTCTTGGCGCCCATGCTGCCCGGAATGATCCCCATCTCGCCCTTG 464 Query 168582 TGCGCCGACACCGCGCCCTTGCGGGTCACGAAGATGTCCTCGCCGAAGTGGCGTTCCTTG 168641 |||| |||||||||||||||||| | | | ||||| |||||||||| | || | Sbjct 463 CGCGCACTCACCGCGCCCTTGCGGGTGAGCATCACGTCCTTGCCGAAGTGGTGCTCGCGG 404 Query 168642 TTGACGTAGTTGTGGTGACAGTTCACCGCTTC 168673 | |||||||||||||| ||||| ||||| || Sbjct 403 CTCACGTAGTTGTGGTGGCAGTTGACCGCCTC 372 Score = 86.0 bits (94), Expect = 1e-11 Identities = 117/165 (71%), Gaps = 15/165 (9%) Strand=Plus/Minus Query 168869 CTTCGCCTTCTCGATGAAGTAGTTGCCGATCACGTTGCCGACGCCGCGCGATCCCGAGTG 168928 ||| ||| ||||||||||||| ||||||| | ||||| ||||||||||| || ||||| Sbjct 245 CTTGGCCAGCTCGATGAAGTAGGTGCCGATGGCATTGCCCACGCCGCGCGAGCCGGAGTG 186 Query 168929 CAGCATCACCCACACGTTCGGGTCCGTCGTCCCCTGATCGGTCTGGATGCAGATTTCGAT 168988 |||||| | ||||||| | ||| | || ||| | |||||| || | Sbjct 185 CAGCATGAACCACACGCGCTGGT-CTTCATCC--------------AGGCAGATCTCCAC 141 Query 168989 GAAGTGGTTGCCGCCACCCAGCGACCCGAGTTGGGTCACGTTGTT 169033 ||||||||||||| |||| || || || || | | |||||| Sbjct 140 GAAGTGGTTGCCGGTGCCCAACGTGCCCAGGTGCTTGAGGTTGTT 96 >seq446 Length=116643 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 |||||||||||||| |||||||||||| ||||||||||| |||||| ||||||||| Sbjct 5758 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCACAGGTTCAAAT 5817 Query 133023 CCCTCCCCCGCATCCA 133038 || ||||||| ||| Sbjct 5818 CCTGTCCCCGCAACCA 5833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895616560675440