Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_019407.1 Length=218929 Score E Sequences producing significant alignments: (Bits) Value seq1252 152 7e-32 seq5605 134 2e-26 seq4225 109 8e-19 >seq1252 Length=525 Score = 152 bits (168), Expect = 7e-32 Identities = 147/186 (79%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 136007 CTCCTTGGCCTTCTCGATGAAGATACG-GCCGATGGTGTTGCCGACGCCGCGCGAGCCCG 136065 || ||||||| |||||||||| || | |||||||| ||||| |||||||||||||| | Sbjct 248 CTGCTTGGCCAGCTCGATGAAG-TAGGTGCCGATGGCATTGCCCACGCCGCGCGAGCCGG 190 Query 136066 AGTGGAGCATCACCCAGACGCGCTGGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGC 136125 |||| ||||| | ||| ||||||||||| || || ||||||| ||| | ||||||||||| Sbjct 189 AGTGCAGCATGAACCACACGCGCTGGTCTTCATCCAGGCAGATCTCCACGAAGTGGTTGC 130 Query 136126 CGCCGCCCAGGGTGCCCAGTTGGACCACGCTGTTGGCGTTCTTCAGCGCCGGGTACTTCT 136185 || ||||| |||||||| || | | |||||| |||||||||| |||| || Sbjct 129 CGGTGCCCAACGTGCCCAGGTGCTTGAGGTTGTTGGTGTTCTTCAGCTTGGGGTGGCGCT 70 Query 136186 CGCAGA 136191 |||||| Sbjct 69 CGCAGA 64 Score = 96.9 bits (106), Expect = 5e-15 Identities = 126/172 (73%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 135657 CCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATCCCGAACTGGTCCTTC 135716 |||||||||||| | |||||| ||||| ||| || |||||||| | || | |||| Sbjct 523 CCGCGCACGATGAAACTCTTGGCGCCCATGCTGCCCGGAATGATCCCCATCTCGCCCTTG 464 Query 135717 TGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGGAATTC-CTT 135775 |||| |||||||||||||||||| | | || || | |||||||| || | Sbjct 463 CGCGCACTCACCGCGCCCTTGCGGGTGAGCATCACGTCCTTGCCGAAGTGGTGCTCGCGG 404 Query 135776 CTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAACGGC 135827 || |||||||||||||||||||| ||||| || | || || ||||||| Sbjct 403 CT-CACGTAGTTGTGGTGGCAGTTGACCGCCTCGGCCTGCGCCTCGAACGGC 353 >seq5605 Length=799 Score = 134 bits (148), Expect = 2e-26 Identities = 250/365 (68%), Gaps = 9/365 (2%) Strand=Plus/Plus Query 27011 GATCCGCGCCCTGTTCGACATGGACCGCTCGGGCGCGGGCATGACCTGGGACTTCTTCCA 27070 |||| ||| |||||||||||||||||| || |||||||| |||||||||||||||| Sbjct 366 GATCTACGCGCTGTTCGACATGGACCGCAGCGGGGCGGGCATCGCCTGGGACTTCTTCCA 425 Query 27071 CCGCGCCACCCCGCGCATGAAGATCATCGACTATGTCGAGGACCGCGACCTGTGGCGCTT 27130 || || | | || | | |||||| |||| || |||||||||||||||||||| Sbjct 426 CCCCGGCCAGGCACGGCCGGCTCTGATCGACCATGTGGAAGACCGCGACCTGTGGCGCTT 485 Query 27131 CAACCAGGAAGGCTCGCGCGAGGTCTCGGCCTACATCTTCGCCCACGACTACCGCTTCGA 27190 | | | ||| |||||||| || ||| | ||||| | | | |||| ||||| Sbjct 486 CGCACTGCCGGGCACGCGCGAGATCCAGGCGGCCGTCTTCAGCTATGCGTACCAGTTCGA 545 Query 27191 CAACTGGGACGCCCTGGCCGGCGAGATCGAGATCGACCTCCCGACGGTGATCGCCGCCGG 27250 | |||||| || | ||| | | | | || || | || |||| || Sbjct 546 CTTGTGGGACCGGCT-GATGGCCACGCC--GGTGGA------GATGCTGCGCGCCCAAGG 596 Query 27251 GGCGGCGATCGAGAAGAAGCACCACAAGGACATCGGCGAGCTTCTGCGCCAGACCCAGCG 27310 | || |||||| ||||||||||||||| | | |||||| || | |||| Sbjct 597 TGTTGCCATCGAGCGAAAGCACCACAAGGACGTGGCCGAGCTGGTGAAGGTTGCGAAGCG 656 Query 27311 CGAGATGATCATCGGCGGCTACCGCGTGCCGGTCGCCAATATGCCCTACACCCTGGCCAG 27370 | ||||| | |||||| |||| ||||||||| || | |||| |||||| ||||||| Sbjct 657 CCAGATGGTGATCGGCCACTACGACGTGCCGGTGGCGAGCCTGCCATACACCTTGGCCAG 716 Query 27371 CGACG 27375 ||||| Sbjct 717 CGACG 721 >seq4225 Length=585 Score = 109 bits (120), Expect = 8e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 136322 GCGAAGCTTGGACAGGCTGTCGGGAAGGTCCGACGCGGTCAGGCTGGTGCGGACCGCCAT 136381 ||| ||| || |||| ||||||| |||||| ||| ||| ||||||| |||||| Sbjct 36 GCGCAGCCGGGCCAGGTTGTCGGGCAGGTCCTCGGCGCGCAGCGTGGTGCGCACCGCCGC 95 Query 136382 CATGCCGCAGCCGATGTCGACGCCGACGGCGGCCGGGATGATCGCGCC 136429 |||||||||||||||||| |||||||| |||||||| ||||||||||| Sbjct 96 CATGCCGCAGCCGATGTCCACGCCGACCGCGGCCGGAATGATCGCGCC 143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 700327633096080