Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_019408.1 Length=223720 Score E Sequences producing significant alignments: (Bits) Value seq4225 192 8e-44 seq1252 152 7e-32 seq5605 127 3e-24 >seq4225 Length=585 Score = 192 bits (212), Expect = 8e-44 Identities = 201/264 (76%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 140297 GCGCAGCTTGGCGAGGCTGTCGGGCAGGTCCGAGGCCTTCAGCGAGGTGCGCACGGCCAT 140356 ||||||| ||| ||| |||||||||||||| ||| ||||| ||||||||| ||| Sbjct 36 GCGCAGCCGGGCCAGGTTGTCGGGCAGGTCCTCGGCGCGCAGCGTGGTGCGCACCGCCGC 95 Query 140357 CATGCCGCAGCCGATGTCCACGCCCACGGCCGCCGGGATGATGGCGCCCTTGGTCGGGAT 140416 |||||||||||||||||||||||| || || ||||| ||||| ||||| ||| ||||| Sbjct 96 CATGCCGCAGCCGATGTCCACGCCGACCGCGGCCGGAATGATCGCGCCGCGGGTAGGGAT 155 Query 140417 CACCGAGCCCACGGTCGAGCCGATGCCCATGTGGACGTCCGGCATCAGGGCCACATGCGA 140476 ||||||||||||||| | || |||| | ||| ||||||||||||| ||||| || Sbjct 156 CACCGAGCCCACGGTGGCCCCTTTGCCTACGTGCACGTCCGGCATCACCGCCACCCACGG 215 Query 140477 GTGGATGAACGGCAGGGCGGCGAGGTTGTGCGCCTGCACCTGGGCGGGCTGCTCGAAGGT 140536 | || |||||||| ||||||| |||| || ||| || |||| | | || | || Sbjct 216 GCCGACGAACGGCACCGCGGCGATGTTGCGCAGTTGCGCCCGGGCCAGTTCGTCCACGGG 275 Query 140537 CACACCCCGGACCCAGGCCTTGAT 140560 || || | ||||| ||||||| Sbjct 276 TACGCCGTGTACCCAACCCTTGAT 299 >seq1252 Length=525 Score = 152 bits (168), Expect = 7e-32 Identities = 135/166 (81%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 139982 CTCCTTGGCCTTCTCGATGAAGATACG-GCCGATGGTGTTGCCGACGCCGCGCGAGCCCG 140040 || ||||||| |||||||||| || | |||||||| ||||| |||||||||||||| | Sbjct 248 CTGCTTGGCCAGCTCGATGAAG-TAGGTGCCGATGGCATTGCCCACGCCGCGCGAGCCGG 190 Query 140041 AGTGGAGCATCACCCAGACGCGCTGGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGC 140100 |||| ||||| | ||| ||||||||||| || || ||||||| ||| | ||||||||||| Sbjct 189 AGTGCAGCATGAACCACACGCGCTGGTCTTCATCCAGGCAGATCTCCACGAAGTGGTTGC 130 Query 140101 CGCCGCCCAGCGTGCCCAGTTGGACGACGCTGTTGGCGTTCTTGAG 140146 || ||||| ||||||||| || || | |||||| |||||| || Sbjct 129 CGGTGCCCAACGTGCCCAGGTGCTTGAGGTTGTTGGTGTTCTTCAG 84 Score = 89.7 bits (98), Expect = 7e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 139632 CCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATGCCGAACTGGTCCTTC 139691 |||||||||||| | |||||| ||||| ||| || ||||| || | || | |||| Sbjct 523 CCGCGCACGATGAAACTCTTGGCGCCCATGCTGCCCGGAATGATCCCCATCTCGCCCTTG 464 Query 139692 TGAGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGGAACTC-CTT 139750 | || |||||||||||||||||| | | || || | |||||||| ||| | Sbjct 463 CGCGCACTCACCGCGCCCTTGCGGGTGAGCATCACGTCCTTGCCGAAGTGGTGCTCGCGG 404 Query 139751 CTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAAGGGCGGCAGGCC 139810 || |||||||||||||||||||| ||||| || | || || ||| ||| | Sbjct 403 CTC-ACGTAGTTGTGGTGGCAGTTGACCGCCTCGGCCTGCGCCTCGAACGGCTTGGTGAT 345 Query 139811 CGAGGCGCGCATGGCGTCCAGGACCCGGATCATCATCATCTCGCGGTTGAT 139861 | | ||||| ||| ||| || | |||||| ||||||||||| || Sbjct 344 CACCGTGCGCACCGCGGCCACCACGTTGCGCATCATGATCTCGCGGTTCAT 294 >seq5605 Length=799 Score = 127 bits (140), Expect = 3e-24 Identities = 259/380 (68%), Gaps = 26/380 (7%) Strand=Plus/Plus Query 28316 GATCCGCGCCATGTTCGACATGGACCGCTCGGGCGCGGGCATGGCCTGGGACTTCTTCAT 28375 |||| ||| ||||||||||||||||| || |||||||| ||||||||||||||| Sbjct 366 GATCTACGCGCTGTTCGACATGGACCGCAGCGGGGCGGGCATCGCCTGGGACTTCTTC-- 423 Query 28376 GCGCTCCAGCCCGCGCATGAA--GATC--ATCAACTACGTCGAGGACCGCGACCTCTGGC 28431 | | || ||| | ||| | | || ||| || | || || ||||||||||| |||| Sbjct 424 -CACCCCGGCCAG-GCACGGCCGGCTCTGATCGACCATGTGGAAGACCGCGACCTGTGGC 481 Query 28432 GCTTCGACCAGGAAGGCTCGCGCGAGGTCTCGGCCTACATCTTCGCCCACGACTACACGT 28491 |||||| | | ||| |||||||| || ||| | ||||| | | | ||| || Sbjct 482 GCTTCGCACTGCCGGGCACGCGCGAGATCCAGGCGGCCGTCTTCAGCTATGCGTACCAGT 541 Query 28492 TCGACAACTGGAACGCCCTG---GCCGGCGAGATCGAGAT-CGACCTGCCCACGGTGATC 28547 ||||| ||| || ||| ||| | | ||||| | | ||||| |||| | Sbjct 542 TCGACTTGTGGGACCGGCTGATGGCCACGCCGGTGGAGATGCTGCGCGCCCAAGGTGTT- 600 Query 28548 TCCGCCGGCGCGGCGATCGAGAAGAAGCACCACAAGGACATCGGCGAGCTTCTGCGCCAG 28607 || |||||| ||||||||||||||| | | |||||| || Sbjct 601 ------------GCCATCGAGCGAAAGCACCACAAGGACGTGGCCGAGCTGGTGAAGGTT 648 Query 28608 ACCAAGCGCGAGATGATCATCGGCGGCTACCGCGTGCCGGTCGCCAACATGCCCTACACC 28667 | |||||| ||||| | |||||| |||| ||||||||| || | | |||| |||||| Sbjct 649 GCGAAGCGCCAGATGGTGATCGGCCACTACGACGTGCCGGTGGCGAGCCTGCCATACACC 708 Query 28668 CTGGCCAGCGACG-CGGCCA 28686 |||||||||||| |||||| Sbjct 709 TTGGCCAGCGACGCCGGCCA 728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715656268569600