Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_019410.1 Length=221828 Score E Sequences producing significant alignments: (Bits) Value seq1252 149 9e-31 seq5605 145 1e-29 seq4225 109 8e-19 >seq1252 Length=525 Score = 149 bits (164), Expect = 9e-31 Identities = 144/185 (78%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 137806 CTCCTTGGCCTTCTCGATGAAGATGCGGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGA 137865 || ||||||| |||||||||| | |||||||| ||||| |||||||||||||| || Sbjct 248 CTGCTTGGCCAGCTCGATGAAGTAGGTGCCGATGGCATTGCCCACGCCGCGCGAGCCGGA 189 Query 137866 GTGGAGCATCACCCAGACGCGCTGATCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCC 137925 ||| ||||| | ||| |||||||| || || || ||||||| ||| | |||||||||||| Sbjct 188 GTGCAGCATGAACCACACGCGCTGGTCTTCATCCAGGCAGATCTCCACGAAGTGGTTGCC 129 Query 137926 GCCGCCCAGGGTGCCCAGTTGGACCACGCTGTTGGCGTTCTTCAGCGCCGGGTACTTCTC 137985 | ||||| |||||||| || | | |||||| |||||||||| |||| ||| Sbjct 128 GGTGCCCAACGTGCCCAGGTGCTTGAGGTTGTTGGTGTTCTTCAGCTTGGGGTGGCGCTC 69 Query 137986 GCAGA 137990 ||||| Sbjct 68 GCAGA 64 Score = 96.9 bits (106), Expect = 5e-15 Identities = 126/172 (73%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 137456 CCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATCCCGAACTGGTCCTTC 137515 |||||||||||| | |||||| ||||| ||| || |||||||| | || | |||| Sbjct 523 CCGCGCACGATGAAACTCTTGGCGCCCATGCTGCCCGGAATGATCCCCATCTCGCCCTTG 464 Query 137516 TGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGGAATTC-CTT 137574 |||| |||||||||||||||||| | | || || | |||||||| || | Sbjct 463 CGCGCACTCACCGCGCCCTTGCGGGTGAGCATCACGTCCTTGCCGAAGTGGTGCTCGCGG 404 Query 137575 CTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAACGGC 137626 || |||||||||||||||||||| ||||| || | || || ||||||| Sbjct 403 CT-CACGTAGTTGTGGTGGCAGTTGACCGCCTCGGCCTGCGCCTCGAACGGC 353 >seq5605 Length=799 Score = 145 bits (160), Expect = 1e-29 Identities = 262/381 (69%), Gaps = 9/381 (2%) Strand=Plus/Plus Query 27835 GATCCGCGCCCTGTTCGACATGGACCGCTCGGGCGCGGGCATGACCTGGGACTTCTTCCA 27894 |||| ||| |||||||||||||||||| || |||||||| |||||||||||||||| Sbjct 366 GATCTACGCGCTGTTCGACATGGACCGCAGCGGGGCGGGCATCGCCTGGGACTTCTTCCA 425 Query 27895 CCGCGCCACCCCGCGCATGAAGATCATCGACTATGTCGAGGACCGCGACCTGTGGCGCTT 27954 || || | | || | | |||||| |||| || |||||||||||||||||||| Sbjct 426 CCCCGGCCAGGCACGGCCGGCTCTGATCGACCATGTGGAAGACCGCGACCTGTGGCGCTT 485 Query 27955 CAACCAGGAAGGCTCGCGCGAGGTCTCGGCCTACATCTTCGCCCACGACTACCGCTTCGA 28014 | | | ||| |||||||| || ||| | ||||| | | | |||| ||||| Sbjct 486 CGCACTGCCGGGCACGCGCGAGATCCAGGCGGCCGTCTTCAGCTATGCGTACCAGTTCGA 545 Query 28015 CAACTGGGACGCCCTGGCCGGCGAGATCGAGATCGACCTCCCGACGGTGATCGCCGCCGG 28074 | |||||| || | ||| | | | | || || | || |||| || Sbjct 546 CTTGTGGGACCGGCT-GATGGCCACGCC--GGTGGA------GATGCTGCGCGCCCAAGG 596 Query 28075 GGCGGCGATCGAGAAGAAGCACCACAAGGACATCGGCGAGCTTCTGCGCCAGACCCAGCG 28134 | || |||||| ||||||||||||||| | | |||||| || | |||| Sbjct 597 TGTTGCCATCGAGCGAAAGCACCACAAGGACGTGGCCGAGCTGGTGAAGGTTGCGAAGCG 656 Query 28135 CGAGATGATCATCGGCGGCTACCGCGTGCCGGTCGCCAACATGCCCTACACCCTGGCCAG 28194 | ||||| | |||||| |||| ||||||||| || | | |||| |||||| ||||||| Sbjct 657 CCAGATGGTGATCGGCCACTACGACGTGCCGGTGGCGAGCCTGCCATACACCTTGGCCAG 716 Query 28195 CGACGCGGCCAACAAGATGGC 28215 |||||| | | || |||||| Sbjct 717 CGACGCCGGCCACCTGATGGC 737 >seq4225 Length=585 Score = 109 bits (120), Expect = 8e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 138121 GCGAAGCTTGGACAGGCTGTCGGGGAGGTCCGACGCGGTCAGGCTGGTGCGGACCGCCAT 138180 ||| ||| || |||| ||||||| |||||| ||| ||| ||||||| |||||| Sbjct 36 GCGCAGCCGGGCCAGGTTGTCGGGCAGGTCCTCGGCGCGCAGCGTGGTGCGCACCGCCGC 95 Query 138181 CATGCCGCAGCCGATGTCGACGCCGACGGCGGCCGGGATGATCGCGCC 138228 |||||||||||||||||| |||||||| |||||||| ||||||||||| Sbjct 96 CATGCCGCAGCCGATGTCCACGCCGACCGCGGCCGGAATGATCGCGCC 143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 709602881319360