Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_019442.1 Length=60523 Score E Sequences producing significant alignments: (Bits) Value seq3933 443 8e-120 seq2271 363 6e-96 seq10411 197 5e-46 seq2342 176 2e-39 seq3951 105 3e-18 >seq3933 Length=4962 Score = 443 bits (490), Expect = 8e-120 Identities = 305/345 (88%), Gaps = 0/345 (0%) Strand=Plus/Minus Query 10256 CCATTGTTCTCCAAATACAAAACCAATTTCCGCCAGTGCTTCGTCCATTTTGTCGATGAA 10315 |||||| || |||||||||||||||||||| |||||||| ||||||||||| |||||||| Sbjct 4930 CCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAA 4871 Query 10316 CTCCGGCACCATCTCATCAAAACTCGCCATGTACTTTTCATCCCGCTCGACCACGACATA 10375 ||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 4870 CTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGCTCAACCACGACATA 4811 Query 10376 ATGCAGGCCTTCACGCTTCATGCGTGGGTCGTAGTTGGCGAAGTACCAGGCGTCCTTGTC 10435 ||||||||||||||||||||| |||||||| |||||||| ||||||||||| || || Sbjct 4810 ATGCAGGCCTTCACGCTTCATTCGTGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCG 4751 Query 10436 TGTAACCCACATGCTGAATTGCACCTGGGCCATGTAAGCAGGCTTGATAGCGTCAAAGCC 10495 || |||||||||||| | |||||||||||||||||||| | ||| || || || || || Sbjct 4750 CGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTTATGGCCTCGAAACC 4691 Query 10496 GCCAAGCCGGAATTTCATGAAGTCGCGGGAAGTAAAAGGGCATTTAAGCTCAAGACCGTT 10555 || ||||||||||||||||| || ||||| ||||| |||||||| || ||||| ||||| Sbjct 4690 ACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTTCAAGGCCGTT 4631 Query 10556 ACCGTCGCTGCATAAACCGTCGGGAGAGCAGGCGGTGCGCATGCT 10600 ||||| ||||||||||| ||||||||||||||||||||||| || Sbjct 4630 GCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATACT 4586 Score = 226 bits (250), Expect = 1e-54 Identities = 204/254 (80%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 10679 GTATTGCTTTCCCCATGCGAGCGACTTAGCGTTAACTTCCGGTGCCACGCCAGTACAAAC 10738 ||| || |||||||| || |||| |||||| ||||||||||| ||||| || || ||||| Sbjct 4536 GTACTGTTTTCCCCAGGCCAGCGCCTTAGCATTAACTTCCGGAGCCACACCGGTGCAAAC 4477 Query 10739 TTCAGCCAGCAGGGTGTGGAAGTATGACATTTTTGTATCAGGCCATTTGCTGCCGGAACG 10798 ||||||||||||||||||||||| |||||||| | |||||||| || | || || || Sbjct 4476 CTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCTTTCCTGAGCG 4417 Query 10799 TGGCTTTGCTATCACATTGTGAACTTCTGAAGCAGTGATAACACCGAGTCTCAGCTTGTG 10858 |||||||||||||| ||||||||||||||||| ||||| || ||||| | | ||||| Sbjct 4416 GGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCCGTAATTTGTG 4357 Query 10859 CCATCCATCATCGCCCTGGTCGA-GGCTGGTAATATCCACGCCAGTTCGCTGGAGAATAA 10917 |||| ||||||| ||||| |||| ||| | | || | || || ||||| || |||| Sbjct 4356 CCATGCATCATCCCCCTGTTCGACAGCT-CTCACGTCGATCCCGGTACGCTGCAGGATAA 4298 Query 10918 TTTCTGGTGTCATG 10931 | || ||||||||| Sbjct 4297 TGTCCGGTGTCATG 4284 >seq2271 Length=37941 Score = 363 bits (402), Expect = 6e-96 Identities = 397/524 (76%), Gaps = 5/524 (1%) Strand=Plus/Plus Query 2962 CGCATTGGTTACCCCATACATCAAATCCATGCGAGGTGTGGCGGGCGAACAGTTCTATCC 3021 |||| ||||| ||||| || ||||| |||||||| | ||||||||||| || || || | Sbjct 9642 CGCACTGGTTTCCCCAAACGTCAAACCCATGCGACGACTGGCGGGCGAATAGCTCGATGC 9701 Query 3022 GGGGAACATCGCCAAGAAGTTGCACAAGCTTTTCTCGAGCCATATCCGGCTTGCGGGAGT 3081 | || ||||||||||| | ||||| ||||| |||| || ||||||||||| |||| Sbjct 9702 GCGGCACATCGCCAAGCAACTGCACCAGCTTCTCTCTGATCACGTCCGGCTTGCGCGAGT 9761 Query 3082 GATCAAGGCGCGGTGCAGTGA-ATGACTGGATTATTCCGGCGTTAATGCGTTCGGGCAGA 3140 || |||||||| || |||| ||| |||| || |||| ||||| | ||||| Sbjct 9762 TCTCCAGGCGCGGCGCCGTGACATG-CTGGCAGATCGAAGCGTCCATGCGCGCCGGCAGT 9820 Query 3141 TTTCCTTTCACTGCAAAAAGGCAGTCTTCGCTGTTAGCGCGAGTGGTGCTACCCATACCC 3200 || || ||| ||||| || |||||||||||||| || || || || ||||| || Sbjct 9821 TTCCCGCGCACCGCAAACAGACAGTCTTCGCTGTTCGCCCGGGTCATGTGTCCCATGCCG 9880 Query 3201 ATGACCAGCTTGTCGGTCTGTCTTTTCCCGCATTTGTTCCAGGTTAATCCTTTCATCGTC 3260 ||| | ||| | | || | ||| ||||| |||||| ||||| ||||||||| Sbjct 9881 ATGGCGCTGTTGCCTTTGTGCTTATTCGT---TTTGTGCCAGGTGAATCCCTTCATCGTC 9937 Query 3261 ACCAGACGAAAGCCCCACGCTTCTACAACCTTCAATGCTTCAAGTGGTTGTGTAGGCACC 3320 | ||| ||||| ||||||||||| | ||||||||| ||||||| || ||||| || ||| Sbjct 9938 ATCAGGCGAAATCCCCACGCTTCGATAACCTTCAACGCTTCAATCGGCTGTGTTGGAACC 9997 Query 3321 CACCACATAGCCAACAGGCAATTCTCGGCTGCCAGTTCCCATACCGGGAGGCGGCAGATA 3380 ||||||||||||| |||||||| ||||| ||||| ||||| || || ||||||||||| Sbjct 9998 CACCACATAGCCAGCAGGCAATCTTCGGCAGCCAGATCCCACACAGGCAGGCGGCAGATG 10057 Query 3381 TCCAGAAGACTCATGACCGGATATTTAAAACTTGCACCGCGTTGACCATCGGTTGCTTTG 3440 ||||| | |||| |||||||| || || | || ||||| | || |||| ||||||| Sbjct 10058 TCCAGCACGTTCATAACCGGATACTTGAAGCCGGCGCCGCGCTCGCCGTCGGCTGCTTTG 10117 Query 3441 TCGCGGAATGTCCAGGGGGGATCTGCGTAAATGAGGGTGTATTT 3484 || ||| || ||| || || |||||||||||||| |||||||| Sbjct 10118 TCACGGTATACCCAAGGCGGGTCTGCGTAAATGAGAGTGTATTT 10161 >seq10411 Length=590 Score = 197 bits (218), Expect = 5e-46 Identities = 166/202 (82%), Gaps = 5/202 (2%) Strand=Plus/Plus Query 30502 CTGCCCAATTCCAGAAACGAAGAAATGATGGGTGATGGTTTCCTTTGGTGCTACTGCTGT 30561 ||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2 CTGTCCAATTCCCGAAACGAAGAAATGATGGGTGATGGTTTCCTTTGGTGTTACTGCTGT 61 Query 30562 CTGTTTGTTTTGAACAGTAAACGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGC 30621 | |||||||| |||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 62 CGGTTTGTTTCCAACAGTAAACGTCTGTTGAGCACATCCTGTAATAAGCATTGCCAGAGC 121 Query 30622 AGTAGCGAGTAGCAtttttttCATGGTGTTATTCCCGATGC-TTTTTGAAGTTCGCAGAA 30680 | || | | |||||||||||| | |||| | ||| || || || |||||| Sbjct 122 GGCAGAAAACAACATTTTTTTCATCTTATTATCC----TGCATTGTTAAAAACGGCAGAA 177 Query 30681 TCGTATGTGTAGAAAATTAAAC 30702 || |||||| | |||||||| Sbjct 178 TCCTATGTGACAACAATTAAAC 199 Score = 138 bits (152), Expect = 4e-28 Identities = 145/183 (79%), Gaps = 6/183 (3%) Strand=Plus/Plus Query 30758 AGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAA 30817 || |||| || |||||| ||||||||| |||||| ||| || ||||| ||||||||| Sbjct 328 AGCTGCGCTGTATCGTCGCCGTATTCCCGCATTAACCATGACCGTAGCCC-GACGGGGAA 386 Query 30818 CTTCT-CTGCGGGAGTGTGCGGGGATAATCAAAAACGATGCACACCGGGTTTTCTCATTT 30876 | || ||||| ||||||||||| ||||||||||||||||||||||||||||| | | Sbjct 387 TTCCTTCTGCGTGAGTGTGCGGGAATAATCAAAAACGATGCACACCGGGTTTT-ACTGTG 445 Query 30877 TTCACGAGATGGGAGCGATTTCCCGCGAAGCCGCCTGTCCGGTGCGGTGGTGGAAGAAAC 30936 | || ||| | || | || ||| | || ||| | ||||||||| ||||||||||||| Sbjct 446 CTGAC-AGA-CGCAG-GGTTACCCTCATAGTCGCTTTTCCGGTGCGATGGTGGAAGAAAC 502 Query 30937 CGG 30939 ||| Sbjct 503 CGG 505 >seq2342 Length=4104 Score = 176 bits (194), Expect = 2e-39 Identities = 109/117 (93%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 10256 CCATTGTTCTCCAAATACAAAACCAATTTCCGCCAGTGCTTCGTCCATTTTGTCGATGAA 10315 |||||| || |||||||||||||||||||| |||||||| ||||||||||| |||||||| Sbjct 3988 CCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAA 4047 Query 10316 CTCCGGCACCATCTCATCAAAACTCGCCATGTACTTTTCATCCCGCTCGACCACGAC 10372 ||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||| Sbjct 4048 CTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGCTCAACCACGAC 4104 >seq3951 Length=514 Score = 105 bits (116), Expect = 3e-18 Identities = 85/102 (83%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 29919 GGGCTG--AATCATTACCGCGATAACGCCATCACCTACAAAGCGCAGCGCGATAAAAAAG 29976 |||||| ||||||||||| ||||||||||| ||||||||||| |||||||| ||||| | Sbjct 413 GGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATG 472 Query 29977 TCAGTGAGCTGGAGCTGGCAAATGCAACCATTACTGATATGC 30018 ||| || ||| ||||||| || || | |||||||| |||| Sbjct 473 CCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGC 514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193521242409740