Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_019488.1 Length=34117 Score E Sequences producing significant alignments: (Bits) Value seq3418 188 2e-43 seq12163 150 4e-32 seq9435 145 2e-30 seq3006 123 5e-24 >seq3418 Length=506 Score = 188 bits (208), Expect = 2e-43 Identities = 282/395 (71%), Gaps = 4/395 (1%) Strand=Plus/Minus Query 11893 CGGCATAATCCCCATCATCTGCGGCGGAACGCGGTGTGCTGCCATCATGTCATCGCGGCT 11952 ||||| || || | || ||||||||| ||||| | || |||| |||||| ||||| | Sbjct 497 CGGCACGATGCCAAGCAGCTGCGGCGGCACGCGCAGCGCCGCCAGCATGTCGTCGCGCGT 438 Query 11953 CACGTTCTTGATGTTCAAAAACTCATCCTTAGCTGCAACCTCCGAAAGTGGAATGATTTG 12012 |||| ||||||||| ||||||||||| || || ||||| | || ||||| || Sbjct 437 CACGCCCTTGATGTTGGCGAACTCATCCTTGGCCGCCACCTCGCTCACCGGGATGATCTG 378 Query 12013 GATACCGTCCTTTTTACCGTTGGGCGAGTACATAAACAGGTTGCGGAAGTTGCCCGG-CC 12071 | |||||| || || ||||||||||| | || |||||||| |||||||||||||| || Sbjct 377 CAGACCGTCTTTCTTGCCGTTGGGCGAATGCACGAACAGGTTCCGGAAGTTGCCCGGACC 318 Query 12072 CTTTGGCGCTTTTCATTGCCTGGCGGATGTTGTTCACGTCCTCCTGGTTCTG-CGCGGCG 12130 || ||| || | |||| ||| | | | | ||||| | | ||| | | || Sbjct 317 ACGTGCCGC-CTTGAGCGCCTCGCGCAGGCCGGTTACGTCGGAC-GATTCCGCCTGGGAA 260 Query 12131 TCAGTCATGTACATGATGAAGCCTGCGTGGCTACCGTTAATGTAGTACTTCCGGCGGAAC 12190 || |||| ||| | ||||||||| ||||| ||||| |||||||||| || |||||| Sbjct 259 TCGGTCAGGTAGAGGATGAAGCCGGCGTGCGAGCCGTTGTTGTAGTACTTGCGCCGGAAC 200 Query 12191 AGTGTTGCGGACTCATTCAGCAGGGCGGAAGGGATAGCTGACAGATATTCCGGCAGACCG 12250 || || || ||||| || ||||| |||| | | || | || | || ||||| ||| Sbjct 199 AGCGTGGCCGACTCGTTGAGCAGCGCGGCCTGCACGGCCGGCATCCACTCGGGCAGGCCG 140 Query 12251 TAAATCTCCTGGTTTAAATCCGGCTCCATCAGGTG 12285 || | |||||||| | ||| | |||| ||| || Sbjct 139 TACACCTCCTGGTCTGCATCGGACTCCCGCAGCTG 105 >seq12163 Length=619 Score = 150 bits (166), Expect = 4e-32 Identities = 214/296 (72%), Gaps = 14/296 (5%) Strand=Plus/Plus Query 13192 AAGTCCATCCCGCGCCACTGATGACGCTCCAGAATTCGGAACTTCCCGCCAGGTACAGTT 13251 |||||||| || |||| ||||||||||| | |||||||| || || || || Sbjct 10 AAGTCCATGCCCTTGAACTGGTGACGCTCCAGCACGCGGAACTTGCCACCGGGCACTTGG 69 Query 13252 GGCGGTGCCATAACCACGCAGCCTGCGCTGTCACCGTTCTGCGTACCTTTTGCCGGGTCA 13311 ||||| |||| || |||| ||| |||||||| || ||| || |||||||| Sbjct 70 GGCGGCGCCACAATCACGATGCCGGCGCTGTCGCCCGTCT-CG--------GCCGGGTCG 120 Query 13312 TAACCGATCCACACTTCGCGCCAGCCAAACGGGCGCAGCGCCA-GCGCCTGAAAAT--CG 13368 || || |||||||| |||| |||| | ||||||| || | | | ||||| || Sbjct 121 TACCCAATCCACACCGCGCGGTCGCCATATGGGCGCATGGCGAAGGGGCTGAACTCGCCG 180 Query 13369 GTCCAGACTTCCCAGCTGTCCACCATGCACGCCTGCAGC-TCGCTGAGCGGGAACACGGA 13427 | ||| | |||||||||||||| ||||| ||||||| ||| | |||||||||||| Sbjct 181 GCCCACTCCACCCAGCTGTCCACCTGGCACGGCTGCAGCATCG-TCAGCGGGAACACGCT 239 Query 13428 CGCGAGATCGTCCACGAACTCACACATCAGCAGGTTCTGGTATTCGTCCGGGCTGT 13483 ||| |||||||||||||| |||||||||||||| | |||| || | ||||| Sbjct 240 GGCGCTGTCGTCCACGAACTCGCACATCAGCAGGTTGGCGAATTCCTCGGCGCTGT 295 >seq9435 Length=520 Score = 145 bits (160), Expect = 2e-30 Identities = 294/436 (67%), Gaps = 3/436 (1%) Strand=Plus/Plus Query 16121 GGCGCGGTCAAAGTGGGCAAGGGCGGCG---ACTATGCCAACCTGGACGCCGTGGTGATG 16177 ||| |||| || |||||| | ||||| |||| |||||||||||||| |||| ||| Sbjct 56 GGCACGGTGAAGGTGGGCGGCGCCGGCGCGGACTACGCCAACCTGGACGCGCTGGTTATG 115 Query 16178 GATGCCGTCAACGAGCTGATCGACGCGGTTTATCAGGATGATGACGATCTGGTTGTTGTC 16237 |||| || | |||||||| || | ||| | ||| | |||| || || Sbjct 116 GATGTGGTGTCCACCCTGATCGAGCCGTGGCACCAGCAGGATCCGGGCTTGGTGGTCATC 175 Query 16238 TGCGGACGTGAACTGCTGTCTGACAAGTATTTCCCGCTGGTCAACAAAGAGCAGGACAAC 16297 || || | ||| || |||||||| ||||| | ||||||| || | || Sbjct 176 CTGGGCCGCAACCTGGTGCACGACAAGTACTTCCCCATCATCAACAAGGACCTGGCGCCG 235 Query 16298 AGCGAGAAAATTGCCGCCGATCTGATCATCAGCCAGAAACGTATGGGCGGCCTGCAGGCC 16357 | |||| | | ||||| |||||| | | || || || || || ||||||||| | Sbjct 236 ACCGAGCAGCTGGCCGCGGATCTGGTGCTGGGCACTAAGCGCATCGGTGGCCTGCAGCCG 295 Query 16358 GTGCGTGCGCCTTATTTCCCGGCAAATGCCCTGCTGATCACCCGTCTGGATAACCTGTCC 16417 ||| | ||||| ||||||| || |||||| || ||||| ||||| || ||||| Sbjct 296 GTGATCGTGCCTTTCGTCCCGGCCAACGCCCTGATGGTCACCTCGCTGGACAATCTGTCG 355 Query 16418 ATCTACTGGCAGGAAGATACCCGCCGCCGTTCTGTTATCGACAACCCGAAACGTGACCGG 16477 |||||||||||| || ||||||||||| | ||||| | ||| | |||| Sbjct 356 ATCTACTGGCAGATCGACGGCCGCCGCCGTTACCTCATCGAGCAGCCGCAGAAGAACCGC 415 Query 16478 ATTGAAAACTTTGAGTCCGTCAACGAGGCGTATGTGGTCGAGGACTACCGCTGCGCGGCG 16537 | | ||||| ||||| |||||| | || |||||||| |||||| || | | || Sbjct 416 GTGGCGAACTTCGAGTCGTCCAACGACGACTACGTGGTCGAAGACTACGGCCGTGGCGCC 475 Query 16538 CTGGTAGAAAACATCG 16553 ||||| || ||||||| Sbjct 476 CTGGTCGAGAACATCG 491 >seq3006 Length=629 Score = 123 bits (136), Expect = 5e-24 Identities = 185/263 (70%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 27737 ATCGACGAGCAGATCGGCTGGCATAAAACCCTGTCCAATGTGGGTGTGAACGGTGTCACC 27796 ||||| |||||| ||||||||||| | |||||||| |||| || ||| || ||| Sbjct 6 ATCGATGAGCAGCAAGGCTGGCATAAGTCGCTGTCCAACGTGGCCGTAGCCGGCGTGACC 65 Query 27797 GGCATTTCCGCTGATGTGTTCTGGGATCTGCAGGACCCGGCAACCGATGCGGGACTGCTG 27856 ||||| | || || ||||| |||||||| ||||| ||||| || || |||| Sbjct 66 GGCATCAGCCGGGACGTCCATTGGGACCTGCAGGATCCGGCGACCGACGCCGGCATGCTC 125 Query 27857 AACAAAAATGACGTCACCACATTGATCCGCAAAGACGGCTTCCGCTTCTGGGGTTCCCGT 27916 || || ||||||| ||||| | |||| | | |||||||| || || Sbjct 126 AATGCCGCCGATATCACCACGCTGATCAACTCCAACGGGTACAAGTTCTGGGGATCGCGC 185 Query 27917 TGTCTCAGTGACGATCCGCTGTTTGCTTTTGAGAACTACACCCGTACGGCGCAGGTGCTG 27976 ||| || || ||||||||||| || |||| || |||||| ||||||||| | ||| Sbjct 186 ACCTGCAGCGATGAGCCGCTGTTTGCCTTCGAGACCTCCACCCGCACGGCGCAGATCCTG 245 Query 27977 GCTGACACTATGGCGGAGGCGCA 27999 || ||||| || || |||||||| Sbjct 246 GCCGACACCATCGCCGAGGCGCA 268 Score = 89.7 bits (98), Expect = 1e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 28163 CTGACCATCGATTATGACTACACGCCGGTGCCTCCGCTTGAAAACCTGATGCTGCGCCAG 28222 ||| ||||||| | |||||||| |||||||| ||||| ||||||||| ||||| |||| Sbjct 428 CTGGCCATCGACTTCGACTACACCCCGGTGCCGCCGCTGGAAAACCTGCTGCTGAACCAG 487 Query 28223 CGCATCACCGATCGTTACCTGGTCGATTT 28251 ||||||||||| || || | | |||||| Sbjct 488 CGCATCACCGACCGCTATTTCGCCGATTT 516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109035470283236