Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_019501.1 Length=39646 Score E Sequences producing significant alignments: (Bits) Value seq3951 188 2e-43 seq2342 127 5e-25 seq6167 100 7e-17 >seq3951 Length=514 Score = 188 bits (208), Expect = 2e-43 Identities = 112/117 (96%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 17242 ATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 17301 |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 352 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 411 Query 17302 TGGGCTGTTAATCATTACCGTGATAACGCCATGACCTACAAAGAACAGCGCGACAAA 17358 |||||||||||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct 412 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAA 468 >seq2342 Length=4104 Score = 127 bits (140), Expect = 5e-25 Identities = 79/85 (93%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 37504 ATTATGCCACCTTTTCATCAAGCCAGTCCGCCCACCACTGCATCATTTCTCTGCGCTTAT 37563 |||| |||| |||||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct 115 ATTACTCCACTTTTTCATCAAGCCAATCCGTCCACCACTGCATCATTTCTCTGCGCTTAT 174 Query 37564 CGAGATACTGAGCATGGTTGTAAAT 37588 ||||||||||||| ||||||||||| Sbjct 175 CGAGATACTGAGCGTGGTTGTAAAT 199 Score = 111 bits (122), Expect = 4e-20 Identities = 63/64 (98%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 39485 AAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCATTTCTTCAATTCGAATATTGGTTAC 39544 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1792 AAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGGTTAC 1851 Query 39545 GTCT 39548 |||| Sbjct 1852 GTCT 1855 Score = 109 bits (120), Expect = 1e-19 Identities = 65/68 (96%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 204 ATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGAGT 263 |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 1974 ATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGT 2033 Query 264 GCGAGGAT 271 |||||||| Sbjct 2034 GCGAGGAT 2041 >seq6167 Length=616 Score = 100 bits (110), Expect = 7e-17 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 4282 TAAACCTCAGAGCCTTTTCGCAGATATTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATT 4341 || |||| | ||| || ||||||||||| | || | ||| || || || ||| || Sbjct 427 TAGACCTGCGCGCCCTTGCGCAGATATTCACCAGCCACTTCCGCGAGCTTGCCGAACAGC 368 Query 4342 ACCACGCGGTGCCACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGT 4401 |||||||||||||| |||||||||||| ||| || || || || |||||||| | Sbjct 367 ACCACGCGGTGCCATTCCGTCTGCTCCCGCATCTCCCCCGTCTGTTTGTCACGCCAGCTT 308 Query 4402 TCTGACGTAGCAACTGTAAGGTTTGCAAATGCCGTTCCTGATGGTGA-ATATCTGATTTC 4460 |||||||| || || |||||||| | || || || | ||| || || | || ||| Sbjct 307 TCTGACGTGGCGACCTGCAGGTTTGCCACTG-CGCCCCCGTTGGGGATGTAACGGACTTC 249 Query 4461 TGGATCATGCCCAAGGCGACCAATAATGATCACCTTATT 4499 ||||||| || || || || | | ||| ||||| || Sbjct 248 CGGATCATTGCCCAGACGCCCGACGAGGATGACCTTGTT 210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126725458698272