Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_019521.1 Length=219372 Score E Sequences producing significant alignments: (Bits) Value seq126 224 1e-53 seq846 210 3e-49 seq76 93.3 6e-14 >seq126 Length=461790 Score = 224 bits (248), Expect = 1e-53 Identities = 431/622 (69%), Gaps = 29/622 (5%) Strand=Plus/Minus Query 139428 CAAGAAATAGAAAAGGAATTATTTTAGCAGGTGGGTCTGGGACCCGCTTGCATCCATTGA 139487 |||||| || ||||||||||| | || || || ||||| || | || |||||||| | Sbjct 306779 CAAGAA-TATGAAAGGAATTATACTTGCTGGGGGTTCTGGCACAAGATTACATCCATTAA 306721 Query 139488 CTATCAG-TGTTTCGAAACAGTTATTACCTGTATACGATAAACCAATGATTTACTATCCA 139546 | || || |||| ||||| ||| | || || |||||||||||||||||||| |||||| Sbjct 306720 C-ATTAGCTGTTAGTAAACAATTAATGCCGGTTTACGATAAACCAATGATTTATTATCCA 306662 Query 139547 TTGACAACTCTTATCGAAGCTGGTATAAACGAAATACTTATAATATCAACACCACAGGAT 139606 || ||||| | || || || ||||| || || | ||||| ||||| || || ||| Sbjct 306661 TTATCAACTTTAATGATGGCAGGAATAAATGAGATTTTGATAATTTCAACTCCTCATGAT 306602 Query 139607 AGAAATTC-----TTTCGAGAACTTACTAGGTAACGGTTC-ACAATTTGGTGTTAGAATA 139660 ||| ||| || | ||| | || |||| |||||| | ||| | || Sbjct 306601 C----TTCCTCATTTTAGAAAGCTTT-TGGGAGACGGAAGTACAATTGGATGTAAATTTA 306547 Query 139661 GAATACGCTGTTCAAGAAAAACCTAATGGTTTAGCACAAGCTTTCGTTATCGGTGAAGAA 139720 | || || | || ||| || ||||| |||||||| ||||| ||||| || ||| | Sbjct 306546 GT-TATGCAGAACAGCCAAATCCAAATGGATTAGCACAGGCTTTTGTTATTGGAGAAAAT 306488 Query 139721 TTCATAGGTAAATCTAAAGTAGCTCTGATTTTAGGTGACAACATTTTCCATGCTTCTAAT 139780 || ||||| || |||||| ||| | ||||||| || || |||||| | | ||| Sbjct 306487 TTTATAGGGAATGATAAAGTGGCTTTAGTTTTAGGAGATAATATTTTCTTCGGAACAAAT 306428 Query 139781 ATAGATAGATTACTTATGGAAGCTAATATGTCTGAT--AAAAATACGA----TATTTGCA 139834 || | |||| | | ||| ||| || ||| | || | || | ||||| Sbjct 306427 ATGCAGCAATTATTAA---AAGATAAC---TCAGATCCAGAAGGAGGAGTTGTTTTTGCT 306374 Query 139835 TATCGTGTAAATGATCCTCAGAGATATGGTGTAGTTGAATTCGATGAATATGATAACGCT 139894 || | ||| |||||| | |||||||||||||||||||| |||||| || | || ||| Sbjct 306373 TACCATGTTTCTGATCCAGAAAGATATGGTGTAGTTGAATTTGATGAAAATAAAAATGCT 306314 Query 139895 GTTTCGATCGAAGAAAAACC-TTTGAATCCTAAATCTAATTACGCAGTACCAGGCTTATA 139953 ||||||| ||||| ||||| ||||| || ||||| ||||| ||||| ||||| ||||| Sbjct 306313 ATTTCGATAGAAGAGAAACCGCTTGAA-CCAAAATCAAATTATGCAGTTCCAGGATTATA 306255 Query 139954 TTTCTATAATAACGATGTTATCGAAGTAGCTAAGACTATCAAACCTTCAGCTCGTGGAGA 140013 ||| ||| |||| ||| | ||| | || || | |||||| || || | || || Sbjct 306254 TTTTTATGATAATTCTGTAGTTGAAATTGCAAAAAATATCAAGCCAAGCGCAAGAGGTGA 306195 Query 140014 ATACGAAATATCAGATATTAAC 140035 ||| || || ||||| | ||| Sbjct 306194 ATATGAGATCACAGATGTAAAC 306173 >seq846 Length=203651 Score = 210 bits (232), Expect = 3e-49 Identities = 608/923 (66%), Gaps = 32/923 (3%) Strand=Plus/Minus Query 178630 GCTGTAAACTGGAACAATCCAGATAACGATTA---TGCCCAAATGTTCTGGGATCAAAAT 178686 || ||||||||||| | || || || ||||| ||||| |||||||||| || || Sbjct 16421 GCCGTAAACTGGAATACCCCCGAAAATGATTACAGTGCCC---TGTTCTGGGAACAGAAC 16365 Query 178687 ATTAAACAATTCTGGATCGATACAGAATATGTACCTTCTAACGATATA-ACTTCTTGGAA 178745 | | ||||||||| | ||||| |||||| ||||||| || || || || || | || Sbjct 16364 CTGAGGCAATTCTGGGTGGATACTGAATATATACCTTCCAAAGACATTGACAGCTGGAAA 16305 Query 178746 GTCGTTAGAACCTGAAATGAAGAAAACATACATGAGAGCTTTAGGAGGTCTTACATTACT 178805 | || || ||||| || | | || | || || | |||||| | || | || Sbjct 16304 GGACTTTCT-CCGGAAATCCAGCAGGCTTATAAAAGGGCCCTGGGAGGTTTGACCCTGCT 16246 Query 178806 TGACACTTTACAAAGTCATACAGGTATGCCTAAGATCATAGATCATATCGACTCTCTACA 178865 ||||| | ||||| || || || ||||| || || | || ||||| || || || || Sbjct 16245 GGACACCCTGCAAAGCCACACCGGAATGCCCAAAATTCTGGACCATATTGATTCGCTGCA 16186 Query 178866 AAACAAAGCTGTATTATCGTATATGTGTATGATGGAAGCGATACATGCTAAATCATACTC 178925 ||| ||||| || | || | |||||||||||||||||| || ||||| ||||| || || Sbjct 16185 AAATAAAGCCGTGCTTTCTTTTATGTGTATGATGGAAGCCATTCATGCAAAATCCTATTC 16126 Query 178926 AACGATATTTACAACAGTAGCTAATAAAGATGAAATCGATGAAATCTTTAGTTGGATAAC 178985 ||||| |||||||| || | | || | | |||||| ||||| | ||| ||| || Sbjct 16125 CACGATTTTTACAACCGTGACCACTACACAAGAAATCAATGAACTTTTTGACTGGGTACA 16066 Query 178986 TACAAACCCTCAGATTCAATATAAAGCTAGTGTTATCGATTCTTACTATCAAAAGTTAGC 179045 | | ||| | | || | |||||| || || || || | | | Sbjct 16065 TGCCAACAAATACCTGCAGTTTAAAGCAGCAACAATTGACCGCTATTACCGCGCCCTGGA 16006 Query 179046 AAATCCTGAAGTCGATCCAAAGGATTTATTCATGGGGTTAGCTGCATCAGTAATGTTAGA 179105 || | || || | || || ||| ||| || | || || || || | || Sbjct 16005 CAAAAAACAGGTGAATGATGAAGAATTGTTCCTGGCTTTGGGCGCTTCGGTTCTGCTGGA 15946 Query 179106 ATCATTTCTATTTTATTCTGGATTCTTTTTACCATTATATCTTTCTGGTAACGGTAAGAT 179165 ||| ||||| ||||| ||||||||| | || | | |||| || | ||| | || Sbjct 15945 ATCTTTTCTGTTTTACAGCGGATTCTTTATGCCCCTTTGGCTTTGCGGACAAGGTGAAAT 15886 Query 179166 GAAAGCTTCAGCTGATATCATTAAGAAAATCGTAGCTGATGAATCTATTCATGGTGTATT 179225 | || || ||||||||||| || ||| | || ||||||||||| ||||||||||| Sbjct 15885 GGTCGCCAGTGCCGATATCATTAAAAAGATCATTGCCGATGAATCTATACATGGTGTATT 15826 Query 179226 CGTTGGATTACTTGCACAAGAAGTTTACAACACTTTCGATGATACTACAAAGAAAGAATT 179285 ||||| | | || || || ||||| || || || || | ||||| | Sbjct 15825 TGTTGGCCTGTTGGCCCAGGATGTTTATAAAACACTCCCCCAT-CCGCAAAGGGCG---- 15771 Query 179286 AAAAGATGAACTGTTAAGAACTATTTACAG----TTTATACGAAAACGAAGCT-AAGTAT 179340 |||||| ||||| | | | ||| ||||| ||||| | |||| || || Sbjct 15770 -AAAGATAAACTG--ACCGCCCTGCTGCAGGAACTTTAT--GAAAATG-AGCTAAAATAC 15717 Query 179341 ACTGATTACATTTATACCGAAGTTGGATTATCTTCAGATGTAAAAGAATACGTTAAATAC 179400 ||||| | | |||||||| |||| | | | || ||||||||||| || ||| Sbjct 15716 ACTGAAGAGGTCTATACCGACATTGGCCTTACCGCTGAGGTAAAAGAATATGTACGTTAC 15657 Query 179401 AATGCTAATAAAGCTTTGATGAATCTTGGATTCGATCCAGAATTCACACATGGTGAAA-- 179458 ||||| || ||||| ||||||| |||||||| || ||| | | ||| ||| Sbjct 15656 AATGCCAACAAAGCCCTGATGAACCTTGGATTTGA---GGAACTTTTTGA-GGTAAAAGA 15601 Query 179459 --TAAATCCAATCGTATTGAATGGACTTAACACCGAAACAACTCAACATGATTTCTTTTC 179516 | || || || ||||| || ||| | ||| ||||| || ||||||||||||||||| Sbjct 15600 GGTGAACCCGATTGTATTAAACGGATTAAACCTGGAAACCACACAACATGATTTCTTTTC 15541 Query 179517 TATGAAATCTACTAATTACGAAA 179539 | ||||| || ||||| |||| Sbjct 15540 AAAAAAATCGACCAATTATGAAA 15518 Score = 188 bits (208), Expect = 1e-42 Identities = 478/723 (66%), Gaps = 8/723 (1%) Strand=Plus/Minus Query 173007 GCTGAAATCATGATTAATCAGGAATATCAACCTGCTACCCCGACATTCTCAAACGCTGGA 173066 || || ||| | |||||||||||||| || || || ||||| || || || || || Sbjct 18131 GCGGAGATCCTCATTAATCAGGAATACCAGCCGGCCACCCCTACTTTTCTGAATGCCGGT 18072 Query 173067 AAACTTAAAGGT---GGTGAATTGGTATCATGTTTCTTAGATGAAATCGGTGATTCTAAA 173123 ||| ||| || ||| ||||||| || ||||| | ||||||||||| || | Sbjct 18071 AAA---AAACGTTCTGGTCAATTGGTTTCCTGTTTTCTGGATGAAATCGGAGACAACATC 18015 Query 173124 GTTGGAATATCCAAATCTATTCAAGCCGCATTGGATTTATCTTCGATGGGTGGAGGTGTA 173183 ||| || | | ||| | | || || | | ||||| || ||||| || ||| Sbjct 18014 AATGGGATTGGTTATGCCATTGACTCGGCCATGAAACTCTCTTCTATAGGTGGCGGGGTA 17955 Query 173184 TCGTTTAACGTATCTAAATTACGTGCACGTGGTGAAGCTATTAAAGGAATCGACGGAAGA 173243 || |||||| | || ||| |||| || || || ||||| |||||||| | || || | Sbjct 17954 TCTTTTAACCTTTCCAAAATACGGGCGCGCGGGGAAGCCATTAAAGGTGTGGAGGGCCGG 17895 Query 173244 GCTTCAGGTGTTTTACCAGTAATGAAAATCCTTGAAGATGCTTTTTCATATGCTAATCAA 173303 | || || | || || |||||||| || |||||| |||| || ||||| ||||| Sbjct 17894 TCCAGTGGCGTGCTTCCGGTCATGAAAATTCTGGAAGATACTTTCTCCTATGCCAATCAG 17835 Query 173304 TTAGGACAACGTCCAGGTGCTGGAGCTGCTTATATCAATATCTTCCATTCAGATGTTGAA 173363 | || || || ||||| || || || | || | ||| | || ||| | || ||||| Sbjct 17834 CTTGGTCAGCGGCCAGGGGCGGGCGCGGTATACCTGAATGTTTTTCATACCGACATTGAA 17775 Query 173364 GAATTTCTAGATTCTAAGAAAATCAACGCTGACGAAAAATCACGTCTTAAATCGCTTTCG 173423 |||||||| |||| ||| || |||||| |||||||| | | | ||||| ||||| Sbjct 17774 GAATTTCTGGATTGTAAAAAGATCAACATCGACGAAAAGGTAAGGATCAAATCTCTTTCT 17715 Query 173424 TTAGGTGTTATCGTTCCTGACAAATTCATGGAATTAGCTG-AGAAGGATGAACCATTTTA 173482 | ||||| | | || || || || ||||| | |||| || | ||||| | ||| Sbjct 17714 ATTGGTGTGGTGATCCCGGATAAGTTTATGGACATTGCTGCAGCA-GATGAGATCTGTTA 17656 Query 173483 TGTTTTCTATCCATATACAGTTAAGAAAGAATACGGTAAACATCTAGATGATTTGGATAT 173542 | |||| |||||| |||| || | ||||||| | | | | ||||| ||||||| Sbjct 17655 TCTTTTTTATCCACATACGGTATTTCAGCAATACGGCATCCCTTTGGATGAAATGGATAT 17596 Query 173543 CGATACAATGTATTCCGAATTAGTTTCTAATCCTAATGTTAAGAAACGTAAGTTAAATGC 173602 ||| |||||| | | | || || || || || ||| ||| | ||||| Sbjct 17595 GGATCAAATGTACGACCAGCTGGTAGGCAACCCCAAAGTCCGCAAAAAAAAGGTCAATGC 17536 Query 173603 TAGACGTATGTTAACTAAGATTGCACAAGTTCAGAAAGAATCAGGTTATCCATATTTCTT 173662 | | | | | ||| || || || || || ||| |||||||| ||||| || Sbjct 17535 CCGGCATTTAATGGTTAAAATAGCGCAGACCCAAAAGGAAAGTGGTTATCCGTATTTATT 17476 Query 173663 CTTGAAAACTAATGCTAACGAATATCATCCTTTGAAGAATTTGGGAGACGTTAAGTTTTC 173722 || ||| ||||| || || | ||| |||| | ||| |||| || || || || || Sbjct 17475 TTTTAAAGGCAATGCCAATAAAGAACATGCTTTACAAAATCTGGGGGATGTAAAATTCTC 17416 Query 173723 TAA 173725 ||| Sbjct 17415 TAA 17413 >seq76 Length=330973 Score = 93.3 bits (102), Expect = 6e-14 Identities = 154/219 (70%), Gaps = 5/219 (2%) Strand=Plus/Minus Query 139827 TATTTGCATATCGTGTAAATGATCCTCAGAGATATGGTGTAGTTGAATTCGATGAATATG 139886 ||||||| |||||||| ||||| || ||||||| |||||||| || |||||| | Sbjct 282714 TATTTGCCTATCGTGTGGCCGATCCGGAGCGATATGGCGTAGTTGAGTTTGATGAAAACA 282655 Query 139887 ATAACGCTGTTTCGATCGAAGAAAAACC-TTTGAATCCTAAATCTAATTACGCAGTACCA 139945 | || || |||| || ||||||||||| |||| || ||||| |||| || || || Sbjct 282654 AGAAGGCCATTTCTATAGAAGAAAAACCAACTGAA-CCAAAATCCGATTATGCTGTCCCG 282596 Query 139946 GGCTTATATTTCTATAATAACGATGTTATCGAAGTAGCTAAGACTATCAAACCTTCAGCT 140005 || | ||||||||| | ||| || | || | || || | || ||||| || | Sbjct 282595 GGACTTTATTTCTATGACAACTCGGTGGTGGAGATTGCCAAAAACATTAAACCATCTCCA 282536 Query 140006 CGTGGAGAATACGAAATATCAGAT---ATTAACGCATAT 140041 | || || |||||||| ||||| | ||| |||||| Sbjct 282535 AGAGGGGAGTACGAAATTACAGATGTCAATAAGGCATAT 282497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 701744995967040