Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_019522.1 Length=48454 Score E Sequences producing significant alignments: (Bits) Value seq9363 114 4e-21 seq2271 107 6e-19 >seq9363 Length=957 Score = 114 bits (126), Expect = 4e-21 Identities = 112/141 (79%), Gaps = 5/141 (4%) Strand=Plus/Minus Query 375 GAATTTAAAATCCCTCGGCGTTCGCGCTGTGCGGGTTCAAGTCCCGCCCCGGGCACCATT 434 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 935 GAATTTAAAATCCCTCGGCGTTCGCGCTGTGCGGGTTCAAGTCCCGCTCCGGGTACCATG 876 Query 435 GATTTAAAAAGAATTAAAAC-AAGCACTTATGTGCAATGTCGT-AGACCGCCGAGAGGCG 492 | | |||||| ||| | ||||| || ||| |||||| | ||| || || | Sbjct 875 GGAAAGATAAGAATAAAATCAAAGCA---ATAAGCAGTGTCGTGAAACCACCTTCGGGTG 819 Query 493 GtttttttGTGCCTGAAAGTC 513 |||||||||||| || || || Sbjct 818 GTTTTTTTGTGCATGCAATTC 798 >seq2271 Length=37941 Score = 107 bits (118), Expect = 6e-19 Identities = 189/268 (71%), Gaps = 8/268 (3%) Strand=Plus/Plus Query 14669 AAACTGGAATTGAATCTGGATGCTCAGGAACTGGAAATGCTGCGCCGGAATTGTGCTGCG 14728 |||||||| ||| || || | |||||| |||| |||||| ||||| ||||| | | Sbjct 19252 AAACTGGAGCTGATGCTCGACGAGCAGGAAATGGAGATGCTGGCGCGGAACTGTGCGGAG 19311 Query 14729 CGGCGACCAGGCAAAGAGCCATACGATATGGACGAGTATATCCAGATGCTGATCCGTCAG 14788 || || || || | ||||||||||| | |||||| ||| |||| ||||| ||| Sbjct 19312 CGTCGCCCGGGTAGGGAGCCATACGAACTTAGCGAGTACATCGCTCTGCTTATCCGCCAG 19371 Query 14789 GATGATGCGCGCGTGCGCCAAAAAATAAAGGCGATC--GGTCATCGTATTTGCGGGAAAT 14846 ||||||||||| |||||| | || || || ||| | || | | |||||||| | Sbjct 19372 GATGATGCGCGGGTGCGCGGACGCATCAAAGCCATCAGCGCCAAC--AAGTGCGGGAAGT 19429 Query 14847 GCGGTGAGTCTTTGCCAGTGGATTCATGCTGCATG-ACTGGCGACTCTGCGTGCTGGAAT 14905 ||| || |||| ||| | || ||| | || | || || ||||| |||||| | Sbjct 19430 GCGACGACATCCTGCCGGTGAAGTCCTGC-CCGTGCGCCGGTGATTCTGCCTGCTGGGTT 19488 Query 14906 AC-CAGTGGCTGGCACGAAATGAAATTA 14932 || ||| ||||||||||||| |||| || Sbjct 19489 ACGCAG-GGCTGGCACGAAACGAAACTA 19515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154906579689344