Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_019544.1 Length=49335 Score E Sequences producing significant alignments: (Bits) Value seq1087 141 3e-29 seq93 129 2e-25 seq1310 116 1e-21 seq5955 93.3 1e-14 >seq1087 Length=202632 Score = 141 bits (156), Expect = 3e-29 Identities = 341/515 (66%), Gaps = 6/515 (1%) Strand=Plus/Minus Query 45494 GATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAG 45553 || || || || ||||||||| || || |||||| ||| |||| || | || | Sbjct 83900 GACCGTACCGGGACAGGCACACGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTGTCG 83841 Query 45554 GACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTG 45613 | || || || | ||||||| || || ||||| || || ||||| | || ||| Sbjct 83840 GCGGGTTTTCCTGCCCTGACGACCAAGAAACTGCATCTCAAATCCATCATCCACGAGCTG 83781 Query 45614 CTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGATT 45673 || ||||| | |||||||| ||||| | |||| | |||| || || |||||||| Sbjct 83780 CTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCGTGACGATC 83721 Query 45674 TGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCGG 45733 ||||| || |||||||| || |||||||||||||| || |||| ||| || ||||| Sbjct 83720 TGGGATGAATGGGCCGACGAGAACGGCGATCTCGGGCCGGTCTATGGCTATCAGTGGCGC 83661 Query 45734 TCGTGGAAAGGGGCTGACG---GGAAAACGGTCGACCAAATTGCGGCGGTCTTTAAGGAA 45790 || ||| | | | |||| || | | |||| || |||||| || | | | Sbjct 83660 TCCTGGCCTGCGCCCGACGGCCGGCATA---TCGATCAGATTGCGAATCTCGTCAGTGCG 83604 Query 45791 ATCAAGCGCAACCCGAACTCGCGGCGGTTGCTTGTGAGCGCGTGGAACGTGGCAAAGTTG 45850 || |||| || || | |||||||| || | || ||| ||||| ||| | Sbjct 83603 ATAAAGCAAAATCCCTATTCGCGGCGTCTGATCGTTTCCGCATGGAATCCGGCGCTCGTC 83544 Query 45851 GGGGAAATGAAGTTGCCCCCATGTCATTACGCCTTTCAGTTTTACGTCGCGAATGGCCGG 45910 | |||||| | |||| || || || | | || ||||| ||||| || | || | Sbjct 83543 GATGAAATGGCGCTGCCGCCCTGCCACTGCCTGTTCCAGTTCTACGTGGCCGACGGAAAG 83484 Query 45911 TTGTCATGCATGTGGCAACAGCGTTCTGTCGATACATTTCTAGGATTGCCGTTTAACATC 45970 | || ||| | | ||||| || | ||||| ||||| || ||||||| || ||| Sbjct 83483 CTTTCCTGCCAGCTCTACCAGCGCTCCGCCGATATCTTTCTCGGCGTGCCGTTCAATATC 83424 Query 45971 GCTAGCTATGCGCTGTTGACACATATGGTTGCCCA 46005 || |||||| ||| |||| | ||||| || || Sbjct 83423 GCATCCTATGCCCTGCTGACCCTCATGGTGGCGCA 83389 >seq93 Length=584700 Score = 129 bits (142), Expect = 2e-25 Identities = 212/304 (70%), Gaps = 4/304 (1%) Strand=Plus/Minus Query 45431 AAAACTATGAAACAATATCTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTGGAGAAA 45490 ||| | ||||||||||| |||| || | || || | |||||||||||| | ||| Sbjct 272967 AAAGCAATGAAACAATACTTAGATTTAGTAAAATACGTTTTAGAAAACGGCAATCAAAAA 272908 Query 45491 GAAGATCGGACGGGAACAGGCAC--ATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACT 45548 | || || || |||||||| || | || || || ||| ||| |||| ||| | | Sbjct 272907 GGTGACCGAACAGGAACAGGAACGAAAAGT--GTTTTTGGCTACCAGATGCGTTTTGATT 272850 Query 45549 TGCAGGACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATG 45608 | || || ||||| | || ||||| ||||| | ||| | |||||||| || | Sbjct 272849 TAAGTGAAGGTTTCCCAATGGTTACGACAAAAAAACTCCATTTAAAATCGATCATCTACG 272790 Query 45609 AACTGCTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGA 45668 || |||| |||||||||||||| ||||| ||| || ||| | |||| ||||| || | Sbjct 272789 AATTGCTTTGGTTTTTAAAAGGAGATACAAATATTAAATATCTTAAGGAAAATGGAGTTA 272730 Query 45669 CGATTTGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAAT 45728 || |||||||| ||||| ||| || |||||| | || || | ||||| |||| Sbjct 272729 AAATCTGGGACGAATGGGCTGATTCTAATGGCGATTTAGGACCTGTTTACGGACATCAAT 272670 Query 45729 GGCG 45732 |||| Sbjct 272669 GGCG 272666 >seq1310 Length=146132 Score = 116 bits (128), Expect = 1e-21 Identities = 171/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 45498 GGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAGGACG 45557 |||||||||||||||| | | || |||| |||| || | || ||| | ||||| | Sbjct 104762 GGACGGGAACAGGCACCATCAGTATTTTTGGCCATCAGATGAGGTTCAACCTCCAGGAAG 104821 Query 45558 GATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTGCTCT 45617 | || || || || || || ||||| | ||| | || || || | |||||| ||| Sbjct 104822 GCTTTCCCCTGGTCACCACCAAAAAACTTCATTTAAAATCCATTATCCACGAACTGATCT 104881 Query 45618 GGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGATTTGGG 45677 ||||||||| || || || ||| || |||| || | | || ||| | ||| |||| Sbjct 104882 GGTTTTTAAGTGGGGACACCAATATTGGCTACCTGAAAGCAAACAATGTAAAGATCTGGG 104941 Query 45678 ACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCGGTCGT 45737 | |||||||| ||||||||||| || || ||||| | || || | |||||||| || | Sbjct 104942 ATGAGTGGGCTGATGAAAACGGTGACCTGGGCCCTGTTTATGGATCACAATGGCGTTCAT 105001 Query 45738 GG 45739 || Sbjct 105002 GG 105003 >seq5955 Length=632 Score = 93.3 bits (102), Expect = 1e-14 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 45656 GAGAATGGTGTGACGATTTGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATC 45715 ||||| || || ||||| ||||||||||||||||||||| |||||| |||||||| || Sbjct 605 GAGAACGGGGTCACGATCTGGGACGAGTGGGCCGATGAATCCGGCGACCTCGGCCCGGTC 546 Query 45716 TACGGCGCGCAATGGCGGTCGTGG 45739 ||||| | ||| ||||| |||||| Sbjct 545 TACGGGGTGCAGTGGCGTTCGTGG 522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157725331686748