Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_019706.1 Length=42780 Score E Sequences producing significant alignments: (Bits) Value seq2342 392 9e-105 seq3951 178 4e-40 seq4720 131 5e-26 seq4056 127 6e-25 seq4833 104 6e-18 seq7676 89.7 1e-13 >seq2342 Length=4104 Score = 392 bits (434), Expect = 9e-105 Identities = 237/250 (95%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 23926 AAAAAACCGCCATCAGGCGGTTTTGTGTTCTTTCAGTTCTTCAATTCGAATATTGGTTAC 23985 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 1792 AAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGGTTAC 1851 Query 23986 GTCTGCATGTGCTATCTGCGCCCATATCATCCAGTGGTCATAGCAGTCGTTGAAGTCCTC 24045 |||||||||||||||||||||||| | |||||||||||||||||||||| ||| || ||| Sbjct 1852 GTCTGCATGTGCTATCTGCGCCCACAGCATCCAGTGGTCATAGCAGTCGCTGATGTTCTC 1911 Query 24046 TGCTTCGATAACCCTGTTGAATGGTTCTCCATTCCATTCACCTGTGACTCGAAAGTGCAT 24105 ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1912 GGCTTCGATAACTCTGTTGAATGGTTCTCCATTCCATTCACCTGTGACTCGGAAGTGCAT 1971 Query 24106 TTATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGA 24165 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 1972 TTATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCA 2031 Query 24166 GTGCGAGGAT 24175 |||||||||| Sbjct 2032 GTGCGAGGAT 2041 >seq3951 Length=514 Score = 178 bits (196), Expect = 4e-40 Identities = 109/116 (94%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 40745 ATGAGCAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCAGCCTGTCA 40804 |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 352 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 411 Query 40805 TGGGCGGTTAATCATTACCGTGATAACGCCATTACCTATAAAGAACAGCGCGATAA 40860 ||||| |||||||||||||||||||||||||||||||| |||| |||||||| || Sbjct 412 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAA 467 >seq4720 Length=1289 Score = 131 bits (144), Expect = 5e-26 Identities = 164/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 11569 CTTCTCACCCTTCAGGCCCAGCTTAAAACGCTCGAGCAGCATATCAGCGTAAACGACGTT 11628 || || || |||||||| | || ||||| ||| ||||| | | | ||| || Sbjct 256 CTGCTGACGCTTCAGGCTGAACTCCGGACGCTGGAGAAGCATGCCGGAGCAAATGAGAAA 197 Query 11629 ATCAGCAAACAGCGTCAGGATCTCTGGCAGACTGAAAATCAGTTCACCGTTCTGCAGGAG 11688 |||||| | ||||| | |||| | ||| || | || | ||||||| | || ||| ||||| Sbjct 196 ATCAGCCAGCAGCGCCGGGATTTGTGGAAGGCGGAGAGTCAGTTCGCGGTACTGGAGGAG 137 Query 11689 GCCGCGGGGCGTCGTCAGCTTACGGCGCAGGAAAAATCACTGCTGGCGCACAAGGAAGAA 11748 || ||| ||||| ||||| | || ||||| ||||| ||||||||||| || || || Sbjct 136 GCGGCGCAACGTCGCCAGCTGTCCGCACAGGAGAAATCCCTGCTGGCGCATAAAGATGAG 77 Query 11749 ACGCTCGAGTACAAGCGGCAGCTGGCCGACCTGGGAGATAAGGTT 11793 ||||| |||||||| || |||||||| | || || || |||||| Sbjct 76 ACGCTGGAGTACAAACGCCAGCTGGCTGCACTTGGCGACAAGGTT 32 >seq4056 Length=1939 Score = 127 bits (140), Expect = 6e-25 Identities = 162/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 9106 GTTACCGCGGAAAAGCCCTTGCCAGCGAGCTGAAGTTTGTCCTGAATCTGGCGCGCGAGT 9165 ||| | |||| |||| | | | | ||||||| |||| |||||| |||||||||||| Sbjct 1116 GTTTCTGCGGGAAAGTGTTCGACGGTGAGCTGAGTTTTGCCCTGAAACTGGCGCGCGAGA 1175 Query 9166 TCGGTCGACCCGACTGGCGCGCCATGCTGGCTGGGATGACTTCCAGTGAACTGGGCGACT 9225 | || |||||||||||||| |||||||| || |||||| | |||| || | ||||| Sbjct 1176 TGGGGCGACCCGACTGGCGTGCCATGCTTGCCGGGATGTCATCCACGGAGTATGCCGACT 1235 Query 9226 GGCACCTGTTCTACCGGGAGCATTATTTTCAGGACGCGCAGCTCGATGCGCATTTCTCCG 9285 |||||| || ||| | ||||||||||| || | | ||| ||| ||| || |||| Sbjct 1236 GGCACCGCTTTTACAGTACCCATTATTTTCATGATGTTCTGCTGGATATGCACTTTTCCG 1295 Query 9286 GGCTGCTTTATTCCATCTCCACTCTTTTCTTCCGCGATCCGGA 9328 ||||| || || | || || || ||| |||||||||| Sbjct 1296 GGCTGACGTACACCGTGCTCAGCCTGTTTTTCAGCGATCCGGA 1338 >seq4833 Length=1393 Score = 104 bits (114), Expect = 6e-18 Identities = 76/86 (88%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 22061 TCCTATTATCGGCACCATTTAAATCAATGAGTTACCTCGCATTTAAGTAAACCACGTTCT 22120 ||||||||||| ||||||| ||||||| |||||||| | |||||| || |||||||| | Sbjct 1270 TCCTATTATCG-CACCATTAAAATCAAAGAGTTACCCCATATTTAAATACACCACGTT-T 1327 Query 22121 CCTCTTGTGCCGTATTTGTGCCATTG 22146 |||| ||||||||||||||||||||| Sbjct 1328 CCTCCTGTGCCGTATTTGTGCCATTG 1353 >seq7676 Length=607 Score = 89.7 bits (98), Expect = 1e-13 Identities = 51/52 (98%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 22032 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTAAA 22083 ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 49 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136752665009128