Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_019708.1 Length=37595 Score E Sequences producing significant alignments: (Bits) Value seq2342 1193 0.0 seq3951 205 2e-48 >seq2342 Length=4104 Score = 1193 bits (1322), Expect = 0.0 Identities = 1232/1602 (77%), Gaps = 14/1602 (1%) Strand=Plus/Plus Query 20475 TTGACAAAAAATTAGCGCAAGAAGACAAAAA--TCACCTTGCGCTAATGCTCTGTCTCAG 20532 ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 217 TTGACAAAAAATTAGCGCAAGAAGACAAAAAAATCACCTTGCGCTAATGCTCTGTTACAG 276 Query 20533 GTCACTAATACTATCTAAGTAGTTGATTCATAGTGACTGGATATGTTGCGTTTTGTCGCA 20592 ||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||| ||| Sbjct 277 GTCACTAATACCATCTAAGTGGTTGATTCATAGTGACTGGATATGTTGTGTTTTGTAGCA 336 Query 20593 TTATGTAGTCTATCATTTAACCACAGATT--AGTGTAATGCGATGATTTTTAA-GTGATT 20649 ||||| ||||||| |||| || || | | | ||| || |||| || | || || Sbjct 337 TTATGCAGTCTATTTTTTAG--ACTGAATCAATTATAAGCCGTTGATATTAATTGTTTTT 394 Query 20650 AATGTTATTTTGTCATCCTTTAGGTGAATAAGTTGTATATTTAAAATCTCTTTAATTATC 20709 | ||| ||| | ||| | | ||||||| | ||||| | || ||||| Sbjct 395 ACCGTTTCACATTCAACTTTTTTAT-ACTAAGTTGGCATTATAAAAAAGCATTGCTTATC 453 Query 20710 AGTAAATT--AATGTAAGTAGGTCATTATTAGTCAAAATAAAATCATTTGTCGATTTCAA 20767 | | || || | | |||||| ||| |||||||||||||||||| | |||||||| Sbjct 454 AATTTGTTGCAACGAAC--AGGTCACTATCAGTCAAAATAAAATCATTATTTGATTTCAA 511 Query 20768 TTTTGTCCCATTCCCGTCCACGGCTGTCCCTATACCGCGCCGCCATTGAATCTGATTTAT 20827 |||||||||| |||| || | | || | |||| | | ||||| | || || |||| Sbjct 512 TTTTGTCCCACTCCCTGCCTCTGTCATCACGATACTGTGATGCCATGGTGTCCGACTTAT 571 Query 20828 GCCCGAGAAGACGTTGAGCAAACTTATCGCCAATCTGGTTCCGGTATAGCCTCGCTGACA 20887 ||||||||||| |||||||||| ||||||| ||||| ||| || || || || |||| Sbjct 572 GCCCGAGAAGATGTTGAGCAAATTTATCGCTTATCTGCTTCTCATAGAGTCTTGCAGACA 631 Query 20888 GGCTACGCAGTTCATGGAATGTTGGCGGGTTTCCATCAAATGAGAGTCCAGATGCATTTC 20947 || |||| || || || |||||||| | || || || ||||| || ||||| |||| Sbjct 632 AACTGCGCAACTCGTGAAAGGTTGGCGGATCCCCTTCGAAGGAGAGACCTGATGCTTTTC 691 Query 20948 TCGCCTTTGTAAAATACTTTGATACTGTTTTCGGGGAAAGCGGATCGTGATGCTTTGATG 21007 || |||||||| |||||||||| | |||||||| || || | | |||| Sbjct 692 GTGCGCGCATAAAATACCTTGATACTGTGCCGGATGAAAGCGGTTCACGACGAGTAGATG 751 Query 21008 CGATTATAGTTTCACTGCTGCTGGCCTCCCTGCATTGCTGTAGTGTATCAGCCAATGAGA 21067 | ||||| ||||| | || || |||||| | ||||| || || ||| | Sbjct 752 CAATTATGGTTTCTCCGCCAAGAATCTTTTTGCATTTATCAAGTGTTTCCTTCATTGATA 811 Query 21068 TATTGAGCGCGTCAATCGTTAGCGTTAGTGGAATGGCGAGTTTAGCCCCTGTTTTACTCT 21127 | ||| || |||| | ||| ||| ||||| | ||| | |||||||| || | Sbjct 812 TCCCGAGAGCATCAACATGCAATGTTGTTGGGATGGCAATTTTTACGCCTGTTTTGCTTT 871 Query 21128 GTTCAATGTGAAGATGGTTGTCGTTTATGTCTGACCATTTCATTCTGCACAAATCGCCTA 21187 | || | | ||||| || || || ||||| |||||| ||| ||||| || | Sbjct 872 GCTCGACATAAAGATATCCATCTACGATATCAGACCACTTCATTTCGCATAAATCACCAA 931 Query 21188 CTCTCTGCCCTGTAACGACAGCCAAATCCATTGCCAGTCTCAGCCAGATTGGGAGCGGTT 21247 ||| |||||| ||||| ||||||| |||||||| ||||| ||||| ||| | || Sbjct 932 CTCGCTGCCCGGTAACAACAGCCAGTTCCATTGCAAGTCTAAGCCAACATGGTGATGATT 991 Query 21248 CGGCCGCATGGTATATCGCGACATATTCATTAGCTGTCAGTCTTGAACGCCTTACTTCTG 21307 | || || || || || | ||||| | ||| || |||||||| | |||||| |||| Sbjct 992 CTGCTGCTTGATAAATTTTCAGGTATTCGTCAGCCGTAAGTCTTGATCTCCTTACCTCTG 1051 Query 21308 ATTTTGCTGTGCGGGTTGCTGTTACCGGATTCGTAGCCACATGCCCCTCGGCTATTGCCT 21367 ||||||| | ||| || |||| ||||| || || | | ||| || || ||||| |||| Sbjct 1052 ATTTTGCAGCGCGAGTGGCTGCGACCGGGTTTGTTGTTATATGGCCTTCAGCTATAGCCT 1111 Query 21368 CACGAAAAACGTCAACAAGGGTTGACCTGATTAATTTTGCGGAAGCCGATTTGCCTTCTG 21427 | || || | || || ||||| |||||||| || || || |||| ||||| || Sbjct 1112 CTCGGAATGCATCGCTCAGTGTTGATCTGATTAACTTGGCTGATGCCGCCTTGCCCTCGT 1171 Query 21428 CTACGTAGGTGTTTAGCATTGCTGCCACCTCTTTCGTTGATATGTCAGCGAGCGGTTTGT 21487 ||| ||| || |||||||| || | ||||| || | ||||| | || || | Sbjct 1172 CTATGTATCCATTGAGCATTGCCGCAATTTCTTTTGTGGTGATGTCTTCAAGTGGAGCAT 1231 Query 21488 CAGGCAATTTTCTTCGGATTGCTCTGATTTTGCTGGCGTAGTCGAGTAGAGTTTTCGGCC 21547 |||||| || | |||||| | |||||||| ||| | | || || ||| || Sbjct 1232 CAGGCAGACCCCTCCTTATTGCTTTAATTTTGCTCATGTAATTTATGAGTGTCTTCTGCT 1291 Query 21548 TGATACCCCT-CTCGCTGAGGATTGTTTCATATCGGTCAAGCCACGCATGAAGAGTGATT 21606 |||| || || || || |||||| |||| || || |||||||| | ||| | || | Sbjct 1292 TGATTCCTCTGCTGGC-CAGGATTTTTTCGTAGCGATCAAGCCATGAATGTAACGTAACG 1350 Query 21607 GCGTCAGCGCCTTTAATTCTGTCTATCAGTGACTCACGCCTGTTCCCGGATAGCAACTCA 21666 | | | | | || ||||| || |||| | || | ||| || || | |||||| Sbjct 1351 GAATTATCACTGTTGATTCTCGCTGTCAGAGGCTTGTGTTTGTGTCCTGAAAATAACTCA 1410 Query 21667 ATGTTGGCCTGTATAGCTTCAGTGATTGCGATTCGCCTGTCTCGGCCTAATCCAAACTCT 21726 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1411 ATGTTGGCCTGTATAGCTTCAGTGATTGCGATTCGCCTGTCTCGGCCTAATCCAAACTCT 1470 Query 21727 TTACCCGTCCTTGGGTCCCTGTAGCAGTAATATCCATTGTTTCTTATATAAAGGTTAGGG 21786 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1471 TTACCCGTCCTTGGGTCCCTGTAGCAGTAATATCCATTGTTTCTTATATAAAGGTTAGGG 1530 Query 21787 GGTAAATCCCGGCGCTCATGACTTCGCCTTCTTCCCATTTCTGATCCTCTTCAAAAGGCT 21846 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1531 GGTAAATCCCGGCGCTCATGACTTCGCCTTCTTCCCATTTCTGATCCTCTTCAAAAGGCT 1590 Query 21847 ATCTGTTACTGGTCGATTTAAGTCAACCTTTACCGCTGATTCGTGGAACAGATACTCTCT 21906 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1591 ACCTGTTACTGGTCGATTTAAGTCAACCTTTACCGCTGATTCGTGGAACAGATACTCTCT 1650 Query 21907 TCCATCCTTAACCGGAGGAGGGAATATCCTGCACTCGCGTACCCATCGACGAACTGTTTC 21966 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1651 TCCATCCTTAACCGGAGGAGGGAATATCCTGCACTCGCGTACCCATCGACGAACTGTTTC 1710 Query 21967 AAGGCTTCTTGGGCGTCGCTGGCGAGCGTTCCACTCCTGAAGTGTCAAGTACATCGCAAA 22026 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1711 AAGGCTTCTTGGGCGTCGCTGGCGTGCGTTCCACTCCTGAAGTGTCAAGTACATCGCAAA 1770 Query 22027 GTCTCCGCAATTACACGCAAGAAAAAGCCGCATTGATGCGGC 22068 |||||||||||||||||||||||||| |||| | | ||||| Sbjct 1771 GTCTCCGCAATTACACGCAAGAAAAAACCGCCATCAGGCGGC 1812 >seq3951 Length=514 Score = 205 bits (226), Expect = 2e-48 Identities = 143/163 (88%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 34997 ATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGTCTGTCA 35056 |||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 352 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 411 Query 35057 TGGGCTGTTAATCATTACCGTGATAACGCCATCGCCTACAAAGAACAGCGAGATAAAAAA 35116 |||||||||||||||||||||||||||||||| ||||||||| ||||| || ||||| Sbjct 412 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 471 Query 35117 GTCAGTGAGCTGAAGCAGGCGACCGCCACCATCGCTGACATGC 35159 | ||| || ||||||| ||||| ||| | || ||||||||| Sbjct 472 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGC 514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120163301664588