Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_019721.1 Length=40029 Score E Sequences producing significant alignments: (Bits) Value seq2271 327 3e-85 seq9363 149 2e-31 >seq2271 Length=37941 Score = 327 bits (362), Expect = 3e-85 Identities = 401/545 (74%), Gaps = 2/545 (0%) Strand=Plus/Plus Query 35177 CGCGCTGGTTTCAGCCAGTCACCGATGCGATGAAAGAATTCGGCATT-ACCAAGCCGGTA 35235 ||||||||| || || |||||| || |||||||| || ||||| | ||| ||| | Sbjct 6863 CGCGCTGGTATCTGCATATCACCGCGGCAATGAAAGAGTTTGGCATCGAACAA-CCGCTG 6921 Query 35236 GACCAGGCCATGTTCATTGCGCAGGTTGGGCATGAATCAGCTGGCTTCACTCTCCTGGTG 35295 ||||||| ||||| || |||||||| |||||||| || | ||||| || | ||| | Sbjct 6922 CACCAGGCGATGTTTATCGCGCAGGTCGGGCATGAGTCTACCGGCTTTACCCGGCTGCAG 6981 Query 35296 GAGAGCTTCAATTACCGGATTGCCGCACTAGTTAACTTCATTCGTGCAGGACGCCTTACC 35355 || | |||||| ||| | | || | || | ||| | ||| | || ||||| || Sbjct 6982 GAAAACTTCAACTACAGCGTAGCAGGGCTGGCAGGTTTCGTCCGTACCGGGCGCCTAACT 7041 Query 35356 GCAGAACAGGCAAACGCGTTAGGCCGCCGCCCTGAAGAACGGACATTACCGATTGAGCGC 35415 | ||||| |||||| | ||||| || ||| |||| | |||||| | |||||| Sbjct 7042 CAGGGTCAGGCTAACGCGCTGGGCCGTCGTGCTGGTGAACCATCGTTACCGCTGGAGCGC 7101 Query 35416 CAGCGAGCCATTGCGAACCTGGTATACAGCAAACGCATGGGTAACAACGCACCCGGCGAC 35475 ||||| || || || |||||||| ||||||||| | ||||| ||||||| || ||| Sbjct 7102 CAGCGTGCGATCGCCAACCTGGTGTACAGCAAAAGAATGGGGAACAACGGTCCGACTGAC 7161 Query 35476 GGCTGGTTATACCGTGGGCGTGGGCTTATCCAGATTACCGGCCTCAACAACTACCGTGAT 35535 |||||||| |||| ||||| |||||||||||||| ||||| || |||||||| || || Sbjct 7162 GGCTGGTTTTACCTCGGGCGCGGGCTTATCCAGATCACCGGGCTGAACAACTATCGCGAC 7221 Query 35536 TGTGGAAACGGCCTGAAAGTTGATCTGGTTAAGCAACCTCAGTTGCTCGCTGAAGACGTA 35595 || || || |||||||| || |||||||||||||| ||| || |||| || | |||| | Sbjct 7222 TGCGGCAATGGCCTGAAGGTGGATCTGGTTAAGCAGCCTGAGCTGCTGGCGCAGGACGAA 7281 Query 35596 TACGCGGCAAGAAGTGCGGCATGGTTCTTTGTCACTAAGGGCTGCCTTAATCATTCTGGC 35655 |||||||| | || ||||| |||||||| | || || |||||| | || | | ||| Sbjct 7282 TACGCGGCCCGCAGCGCGGCGTGGTTCTTCGCAACCAAAGGCTGCATGAAGTACACCGGC 7341 Query 35656 GACCTGATGCGCGTGACGAAGATTATCAACGGCGGAACGAACGGACTGGAAGATCGTCGC 35715 |||||| ||||||| ||| |||| ||||| || || |||||| | || || || || Sbjct 7342 GACCTGGTGCGCGTCACGCAGATCATCAATGGTGGGCAGAACGGCATCGACGACCGGCGT 7401 Query 35716 GCTCG 35720 || || Sbjct 7402 GCGCG 7406 Score = 223 bits (246), Expect = 9e-54 Identities = 189/233 (81%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 23050 ACCGGCATCGGCACTCGGATAACCAGCTTTTTGAGTCTGTCTATCTCAGCTGCGTGCTCC 23109 |||||||||||||| |||||||||||| | |||| | |||| ||| |||| |||||| Sbjct 18903 ACCGGCATCGGCACGCGGATAACCAGCCTGCGGAGTTCGGCTATTTCATCTGCCTGCTCC 18844 Query 23110 AGCGCGATATCCTTCCAGTCCTGCGCTTCGGCCATCCACCAGGCTACATCTGCTTTAAGG 23169 | | | | | | |||| ||||| | ||||||| || || || ||||||||| Sbjct 18843 ATGACTCTGGCGTACAGGTCCGAGGCTTCACCTTTCCACCATGCCACGTCGGCTTTAAGG 18784 Query 23170 CGGCGCAAGCGCCGCTGTTTGAGTTTGCTCACCATGGCAGCCACCCAAGTTGCTGCAGGG 23229 ||||||| |||||||||||| ||||||||||||||||||||||||| | |||||| || | Sbjct 18783 CGGCGCAGGCGCCGCTGTTTAAGTTTGCTCACCATGGCAGCCACCCCATTTGCTGAAGTG 18724 Query 23230 CACCGATTGCCAGCAGCACGAACATAATCGCGTCGAATGGGTTAGGCATGGCG 23282 | ||||||||||||||||||||||| | | |||||||||||||||||||| || Sbjct 18723 CGCCGATTGCCAGCAGCACGAACATCACCACGTCGAATGGGTTAGGCATGTCG 18671 Score = 150 bits (166), Expect = 5e-32 Identities = 137/170 (81%), Gaps = 11/170 (6%) Strand=Plus/Plus Query 27663 CCTCGTCTCTTCCGAGGTGTCACACCGTATCGCCACGCTGGTGAAGCGTC---TCTGGCT 27719 ||||||||||||||||||||||||||||||||||||| |||||| |||| || || Sbjct 22883 CCTCGTCTCTTCCGAGGTGTCACACCGTATCGCCACGATGGTGAGTCGTCATGTCGTGCA 22942 Query 27720 GTCGTACACAACTGTCTTGCACATTCCGGCTACCCGCT----GGATCTGGATACTGAAAG 27775 | | | || | ||||||||||||||||||||||| |||| ||| || ||| Sbjct 22943 TACCGATAACACAGACTTGCACATTCCGGCTACCCGCTCAGGGGATAAGGAAAC--CAAG 23000 Query 27776 GAATCC--ACGGACCGCTGCGGCACATGTGCCATATACCGTACTGCTTAC 27823 ||| || |||||||||||||||||||||||||||||||||||||| || Sbjct 23001 GAACCCCGCCGGACCGCTGCGGCACATGTGCCATATACCGTACTGCTCAC 23050 Score = 111 bits (122), Expect = 4e-20 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 24797 TCCAGCTCAGCAATCCGCTTCTCTGCGGCTTCCAGCTCATCCAGCAGCGCCAGCACGGTT 24856 |||||||||||||||| || ||| ||||||||||||||||||||||||||||||||| Sbjct 17509 TCCAGCTCAGCAATCCTCTGGTCTTTGGCTTCCAGCTCATCCAGCAGCGCCAGCACGGTG 17450 Query 24857 GCGGGGTTGGCTGCGGCAATAAAT 24880 ||||| ||||||||||| ||| || Sbjct 17449 GCGGGTTTGGCTGCGGCGATATAT 17426 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 24048 TCGGGCAACTTGTAAGCCGTCGTTACAGGTTCGGCACCCTGAAGCATGGCGG 24099 ||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 18133 TCGCGCAACTTGCAAGCCGTCGTTACAGGTTCGGCACCCTGAAGCATGGCGG 18082 >seq9363 Length=957 Score = 149 bits (164), Expect = 2e-31 Identities = 109/123 (89%), Gaps = 4/123 (3%) Strand=Plus/Minus Query 21482 ATTTAAAATCCCTCGGCGTTCGCGCTGTGTGGGTTCAAGTCCCACTCCGGGTACCATGGG 21541 ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 933 ATTTAAAATCCCTCGGCGTTCGCGCTGTGCGGGTTCAAGTCCCGCTCCGGGTACCATGGG 874 Query 21542 AAA-ACTAGAATAAAATCAATG--ATAAGCAGTGTCGTATAAACCACCGAAAGGTGGTTT 21598 ||| | ||||||||||||| | |||||||||||||| |||||||| |||||||| Sbjct 873 AAAGATAAGAATAAAATCAAAGCAATAAGCAGTGTCGT-GAAACCACCTTCGGGTGGTTT 815 Query 21599 TTT 21601 ||| Sbjct 814 TTT 812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127950863936644