Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_019726.1 Length=141836 Score E Sequences producing significant alignments: (Bits) Value seq232 170 2e-37 >seq232 Length=384298 Score = 170 bits (188), Expect = 2e-37 Identities = 421/637 (66%), Gaps = 21/637 (3%) Strand=Plus/Minus Query 93718 TATGTTGCTTTGATTGCAAACCCGTGAGTATCACGAGTATTAAATTGGTAAGAGAAACTA 93777 || |||||||| |||||||| || ||||||||| ||||| |||| || | |||| Sbjct 85983 TAAGTTGCTTTCATTGCAAAACCAAAAGTATCACGTGTATTGTATTGATACGTGAAAGAT 85924 Query 93778 CCTACACCTAATACAACATTAATACTTGCAAAACCTTTTTCTTTTAATCCTTCACAAATT 93837 || | ||||| || || || || ||||||||||| ||||||||| || || ||| Sbjct 85923 CCAATTCCTAAAACCACGTTTGTAGAAGCAAAACCTTTCGCTTTTAATCTCTCGCAGATT 85864 Query 93838 T--GTTGAGCACGTTCATAGTTAATAGAGTCTCCATAAATTAATCCTACGTGTTCATCTA 93895 | ||| || | | | | ||||| || ||||||||| ||| | ||| | | | Sbjct 85863 TCAGTT--GCTCTTGCTACGGTAATACTATCGCCATAAATTGCTCCGATTTGTGGAACCA 85806 Query 93896 ATACTTTGTACCCTTTTTCAGTTTCAGTACCTCCAAATGTATCCCAAAGTACTTCTACTG 93955 || ||||| | ||||| || || || || ||||| ||||||||| | ||| | Sbjct 85805 ATTCTTTGAAACCTTTATCGTTTGTCGTTCCACCAAAAACATCCCAAAGCAATTCGATAA 85746 Query 93956 CACCTTTACGTTCATAATCAGTATCTGCATCAGGGTCTCCGCAAATAATTTTAACANNNN 94015 | ||||| || | || || | | | ||||| | |||||| |||||| || Sbjct 85745 CTCCTTTTTTCTCTTGTTCTGTTTTTCCGTCAGGATTTCCGCAGATAATTAAAATTGGAT 85686 Query 94016 NNNNGCTATCAGGTCTGATTACTACTTTACCTTCACGTCCCATAATAATATCCTTTAATC 94075 || ||||| | || || ||||| ||||| | | ||| || ||||||| Sbjct 85685 CACCACTGTCAGGACGAATAACCACTTTTCCTTCTCTAGAAACGATATCTTCTTTTAATC 85626 Query 94076 T----AGGTAAAGTTTTAGTCATATTACCCCAAAAGTCCCAAGTATCAGATACAATAGAG 94131 | |||||| | ||| | | | ||| || |||||||||||||| || ||||| Sbjct 85625 TTGGGAGGTAATCTGTTA---AAACT-TTCCATAAATCCCAAGTATCAGAAACGATAGAA 85570 Query 94132 AAAATTCCTGTTGGATATATTTCTGTTAACATACGTTTATATGTTTCATACTCATCCATG 94191 | ||||||| ||||||| | |||||| | | | ||| | ||||| |||||| | Sbjct 85569 ACAATTCCTTTTGGATAAACTTCTGTAATTAATCTTTTGAAGGTTTCGTACTCACC---- 85514 Query 94192 GTTTCATAATTACCATTTGCACACATTACTGAGTGTTCAGTAGCAGGGATAGAAGCAACA 94251 || | || |||| |||||||| || ||||| || |||| || ||| | | Sbjct 85513 -TTCTGTCGTTCCCAT----GCACATTACAGAATGTTCTGTTGCAGCGACTGAACCTGCC 85459 Query 94252 ACCATTTCCTTCTCTACGTCTGCATTGTAATATGATTCTAAGAAATCCACTACAGGTACT 94311 |||| ||| || ||| | || || |||||| |||||||||||| | | || | Sbjct 85458 ACCAATTCTTTGTCTGAATTGGCGTTATAATATTCTTCTAAGAAATCGATCGCCGGAATG 85399 Query 94312 GTATCACTACCTTTAAAACTAATTGCATGACCTGCTG 94348 |||||| ||| ||||||| | | ||| || |||| Sbjct 85398 GTATCAGATCCTGTAAAACTCAATAAATGTCCAGCTG 85362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 453671299437120