Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_019923.1 Length=42689 Score E Sequences producing significant alignments: (Bits) Value seq2271 370 3e-98 >seq2271 Length=37941 Score = 370 bits (410), Expect = 3e-98 Identities = 527/736 (72%), Gaps = 13/736 (2%) Strand=Plus/Plus Query 769 TGGCAGGCTGACGCATTCAAGGAGATCCGCGATCACCTACGCAGT----GAAAACAGGTT 824 |||||||| ||||||||| ||||| ||||||||||| |||| | || || Sbjct 20761 TGGCAGGCAGACGCATTCCGCGAGATACGCGATCACCT--GCAGAACCCGGCGACGCGTC 20818 Query 825 TG-AGCCATTGCTGCTCGCCAGGGCATCAGGCCACGGTATCGGCAAATCGGCCTTCATCA 883 |||| ||| |||| ||| | ||||| |||||||| |||||||| || || |||||| Sbjct 20819 ACCAGCCGTTGATGCTGGCCCGCGCATCCGGCCACGGCATCGGCAAGTCAGCTTTCATCT 20878 Query 884 GCATGCTCATCGACTGGGCAGAGAGCACAGCCGTAGACACCCGCGTCGTCGTGACGGCCA 943 ||||| || |||||| | || || ||| | || || ||||| |||| Sbjct 20879 CGATGCTGATTAACTGGGGCATGTCGACCTGCGAGGACTGCAAGGTGGTGGTGACCGCCA 20938 Query 944 ACACCGAAACACAGCTGCGCACCAAGACCTGGCCGGAGATTGCCAAATGGCGCCGGCTCA 1003 ||||||| | ||||||||||||||||| |||||||| || ||||||| || || Sbjct 20939 ACACCGACAACCAGCTGCGCACCAAGACATGGCCGGAAATCATCAAATGGT--CGAATCT 20996 Query 1004 GCCTGTTCTCGCAC---TGGTTCAAGACCACGGCCACATCGATCGTTTCCCTCGACCCCA 1060 | || | | || | ||||||| ||| ||||| |||| | ||||| Sbjct 20997 GGCTAT-CACGAAAGAGTGGTTCACCTGCACCGCCACGGCGATGTACAGCAATGACCCAG 21055 Query 1061 AACACTCCGCATCCTGGCGCGCCGACGCCGTGCCATGGTCCGACACCAACACCGAGGCAT 1120 ||| | |||||| || ||||| | || ||||| || |||||| ||||| | Sbjct 21056 GCCACGACAAGCGCTGGCGAGCTGACGCAATACCGTGGTCTGAGCACAACACAGAGGCGT 21115 Query 1121 TCGCCGGCCTGCACAACGAGGGCAAGCGCATCATCCTGATCTTCGATGAGGCTTCGAACA 1180 ||||||| |||||||||||| | ||||| |||||| || | |||||||| || || |||| Sbjct 21116 TCGCCGGGCTGCACAACGAGCGTAAGCGTATCATCGTGGTATTCGATGAAGCGTCCAACA 21175 Query 1181 TCAGCGACAAGGTGTGGGAAGTGGCTGAGGGTGCGCTGACTGACGAGAACACCGAGATCA 1240 | || |||||||||||| ||||| ||||||||||| ||||| |||| || || | Sbjct 21176 TTGCAGATCTGGTGTGGGAAGTTGCTGAAGGTGCGCTGACGGACGAAGACACGGAAATTA 21235 Query 1241 TATGGGTGGCATTCGGCAACCCGACGCGCAACACAGGCCGATTCCGCGAGTGCTTCCGCA 1300 | |||||||| || || ||||||||||| ||||| || || |||||||| |||||||||| Sbjct 21236 TCTGGGTGGCGTTTGGGAACCCGACGCGTAACACCGGGCGCTTCCGCGAATGCTTCCGCA 21295 Query 1301 AGTTCAAGCACCGGTGGAAGTGCAAGCAGATCGATGCCAGGACTGTTGAAGGCACCAACA 1360 ||| ||||||||| ||||||||| |||||| || | | || || |||||||| |||| Sbjct 21296 AGTACAAGCACCGCTGGAAGTGCGCGCAGATTGACAGCCGCACCGTGGAAGGCACAAACA 21355 Query 1361 AGACCCAGCACCAGAAGTGGATTGATGACTGGGGTGAAGATTCCGACTTCGTCCGCGTCC 1420 || |||| ||||| ||| |||| |||| || ||||| ||||||||| |||| Sbjct 21356 AGCAGCAGCTGCAGAAATGGGTTGACGACTACGGCGAAGACAGCGACTTCGTGAAGGTCC 21415 Query 1421 GTGTGCGCGGCATGTTCCCGAGGGCTTCCGCATTGCAGCTGATACCAACTGACTGGGTGG 1480 | ||||| || || ||||| || || | | | ||| | || ||||| | | | Sbjct 21416 GCGTGCGGGGGATCTTCCCTGACGCGTCAGAACTCCAGTTTATCCCAACAGGCCTTACAG 21475 Query 1481 CCGAGGCCATGAAGCG 1496 ||||||||||||||| Sbjct 21476 ACGAGGCCATGAAGCG 21491 Score = 95.1 bits (104), Expect = 3e-15 Identities = 176/254 (69%), Gaps = 12/254 (5%) Strand=Plus/Plus Query 6144 AACGTGATCGACGCTGGCGGTACCGGCACCGACAACTCGTCCATCTGGCTGATCGGCTGG 6203 ||| | ||||||||||||||||||||||| || ||| | || ||||||||| | | ||| Sbjct 26741 AACATTATCGACGCTGGCGGTACCGGCACTGATAACACCTCTATCTGGCTGGTGGTATGG 26800 Query 6204 GGCGCCAACACCATCCACGGCATCTACCCGAAAGGCTCGCAGGCAGGCCT---GATCCAC 6260 || | |||||| | || ||||||| ||||||||| | | || ||||| || || Sbjct 26801 GGTGAAAACACCGTTCATGGCATCTTCCCGAAAGGGCAGAAAGCTGGCCTACAGACTCAG 26860 Query 6261 AACGACCTAGGCGAGATTGACGCGTTCGATGCCAG-CATG--AACCGCTTCCGCGCCTAC 6317 | |||| || ||| | | |||||||||| || || | || | ||| Sbjct 26861 A---ACCTTGGTGAGCAAACCCTGGTCGATGCCAGTGGTGGTAA---ATACCAGGGCTAT 26914 Query 6318 GGCGACCAGTACCAATGGAAGGCCGGTATTGCCGTGCACGACTGGCGCTACGCCGTTCGT 6377 | ||| ||| ||||| | |||| | || ||| ||||||||||||| || || Sbjct 26915 CGTACCCATTACAAATGGGATAACGGTCTGGCACTGCGTGACTGGCGCTACGTTGTGCGC 26974 Query 6378 ATCGCAAACATCGA 6391 ||||| |||||||| Sbjct 26975 ATCGCCAACATCGA 26988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136461511284084