Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_019927.1 Length=47611 Score E Sequences producing significant alignments: (Bits) Value seq3933 280 4e-71 seq7676 86.0 2e-12 >seq3933 Length=4962 Score = 280 bits (310), Expect = 4e-71 Identities = 273/349 (78%), Gaps = 2/349 (1%) Strand=Plus/Minus Query 11514 TCACCTCCATTGTTCGCCGAAGGTGAAGCCAATCTCTGCAAGCGCCATGTCCATTTTTTC 11573 ||| | |||||| || || || || ||||| || || || ||| |||||||||||| Sbjct 4936 TCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTC 4877 Query 11574 AATGAACTCTGGCACCGCTTCCGTGAAGTCTT-CCATGTACTTTTCATCACGCTCGACAA 11632 |||||||| |||||| || || || || ||||||| |||||||| ||||| || | Sbjct 4876 GATGAACTCCGGCACCATCTC-GTCAAAACTCGCCATGTAATTTTCATCCCGCTCAACCA 4818 Query 11633 CGACATGATGAAGTCCTTCGCGCCTCATTCGCGGGTCATAATTCGAAAAGTACCAGGCGT 11692 |||||| ||| || ||||| ||| ||||||| |||||||| || | |||||||||||| | Sbjct 4817 CGACATAATGCAGGCCTTCACGCTTCATTCGTGGGTCATAGTTGGCAAAGTACCAGGCAT 4758 Query 11693 CCTTGCCGGTTACCCACATGCTGAACTGCACCTGAGCCATGTAGGCCGACTTAATGGCTT 11752 | || | || |||||||||||| |||||||||| |||||||| |||||||| ||||| | Sbjct 4757 CTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTTATGGCCT 4698 Query 11753 CAAATCCGCCGAGGCGGAATTTCATGAAGTCGCGAGAAGTGAAAGGGCACTTAAGCTCAA 11812 | || || ||||| |||||||||||||| || || || || || ||||| || || |||| Sbjct 4697 CGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTTCAA 4638 Query 11813 GCCCGCGGCCATCACTGCAAAGCCCGTCCGGTGAGCATGCAGTGCGCAT 11861 | ||| ||| |||||||| | || || || ||||| || |||||||| Sbjct 4637 GGCCGTTGCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCAT 4589 Score = 215 bits (238), Expect = 2e-51 Identities = 199/252 (79%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 11943 GTATTGTTTGCCCCATGCCAGAGCCCTGGCATTAACTTCAGGAGCTACGCCGGTACACAC 12002 ||| ||||| ||||| ||||| ||| | ||||||||||| ||||| || ||||| || || Sbjct 4536 GTACTGTTTTCCCCAGGCCAGCGCCTTAGCATTAACTTCCGGAGCCACACCGGTGCAAAC 4477 Query 12003 CTCAGCGAGAAGGGTGTGGAAGTAAGACATCTTCATGTCCGGCCATTTTTTACCTGAGCG 12062 |||||| || |||||||||||||| ||||| |||||||| ||||| || || |||||||| Sbjct 4476 CTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCTTTCCTGAGCG 4417 Query 12063 TGGTTTTGATATGACGTTATGAACATCTGATGCGGTGATAACTCCGAGGCGCAGCCTCTG 12122 || |||| ||| ||||| ||||| ||||| |||||||| || ||||| || | | || Sbjct 4416 GGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCCGTAATTTGTG 4357 Query 12123 CCACGCCTCATCTCCCTGTTCGACCGTGAGCACATCTATCCCTGTGCGCTCAAGGATGAT 12182 ||| || ||||| ||||||||||| | ||| || ||||| || |||| ||||| || Sbjct 4356 CCATGCATCATCCCCCTGTTCGACAGCTCTCACGTCGATCCCGGTACGCTGCAGGATAAT 4297 Query 12183 TGCGGGAGTCAT 12194 | || ||||| Sbjct 4296 GTCCGGTGTCAT 4285 Score = 111 bits (122), Expect = 5e-20 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 12419 AGGAATCCGAGCGCCTTAACGGCTTCGATTTGGGTAAGTTCAGAGGAATCGCGAATTTCG 12478 |||||||| || || || || |||||| || || ||||| || || ||||||| ||| Sbjct 4251 AGGAATCCAAGAGCTTTCACTGCTTCGGCCTGTGTCAGTTCTGACGATGCGCGAATGTCG 4192 Query 12479 CGACGGAATATTTTCGAACAAAGAGGCAGCAGGTCTTCATCCCATGTTTTATTCATGGCG 12538 || || ||||| | ||||| || |||| | ||| |||||||||||||||| || |||| Sbjct 4191 CGGCGAAATATCTGGGAACAGAGCGGCAATAAGTCGTCATCCCATGTTTTATCCAGGGCG 4132 Query 12539 ATGAGTACGTCGTTAATTTCTTTGATGGTGGCAATATCTGCCGGGGTGATATCGCGCTCA 12598 || || | |||||| || | ||||| || | |||| ||||| ||||| || Sbjct 4131 ATCAGCAGAGTGTTAATCTCCTGCATGGTTTCATCGTTAACCGGAGTGATGTCGCGTTCC 4072 Query 12599 GGCTGCCTTTCAGC 12612 ||||| | ||| || Sbjct 4071 GGCTGACGTTCTGC 4058 >seq7676 Length=607 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 7474 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAATTAAA 7525 |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 49 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152209408368332