Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq1087 120 5e-22 seq1310 118 2e-21 seq892 104 4e-17 seq5294 93.3 7e-14 seq5955 89.7 8e-13 seq1364 89.7 8e-13 >seq1087 Length=202632 Score = 120 bits (132), Expect = 5e-22 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 122420 GACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAA 122479 |||||||| || || ||||| | || | |||||| || ||||| || || ||| Sbjct 83900 GACCGTACCGGGACAGGCACACGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTGTCG 83841 Query 122480 AAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTT 122539 ||||| || | |||||||| || | || ||| ||||||||||| ||||| Sbjct 83840 GCGGGTTTTCCTGCCCTGACGACCAAGAAACTGCATCTCAAATCCATCATCCACGAGCTG 83781 Query 122540 CTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 122599 ||||||||||| | ||||| || |||||| ||||| || || ||| ||| | ||| Sbjct 83780 CTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCGTGACGATC 83721 Query 122600 TGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCG 122658 |||||||||||||| || || | || ||||||| ||||| || || | || ||||| Sbjct 83720 TGGGATGAATGGGCCGACGAGAACGGCGATCTCGGGCCGGTCTATGGCTATCAGTGGCG 83662 >seq1310 Length=146132 Score = 118 bits (130), Expect = 2e-21 Identities = 212/307 (69%), Gaps = 2/307 (1%) Strand=Plus/Plus Query 122363 ATGAAACAATATCTGGACTTACTGCGTGACGTTCGTGACAACGGGCACGAAAAAGCA-GA 122421 ||||||||||| | || ||| ||| ||| | ||| | ||| || ||||||| || Sbjct 104701 ATGAAACAATACTTAGATTTAATGCAGCTCGTGCTGGACCA-GGGAACACAAAAGCACGA 104759 Query 122422 CCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAAAA 122481 | | ||||| || |||||| | | || ||| || ||| | || |||| || | Sbjct 104760 CAGGACGGGAACAGGCACCATCAGTATTTTTGGCCATCAGATGAGGTTCAACCTCCAGGA 104819 Query 122482 AGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTTCT 122541 ||| || || |||||||| |||||||| |||| | ||||| ||||| || || | Sbjct 104820 AGGCTTTCCCCTGGTCACCACCAAAAAACTTCATTTAAAATCCATTATCCACGAACTGAT 104879 Query 122542 GTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCTG 122601 ||||| | | || || ||||| || || ||||||| ||||| || | ||||| Sbjct 104880 CTGGTTTTTAAGTGGGGACACCAATATTGGCTACCTGAAAGCAAACAATGTAAAGATCTG 104939 Query 122602 GGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCGTGA 122661 |||||| ||||| |||||| | ||| | || ||||| || || || ||||||||| Sbjct 104940 GGATGAGTGGGCTGATGAAAACGGTGACCTGGGCCCTGTTTATGGATCACAATGGCGTTC 104999 Query 122662 GTGGCCA 122668 |||||| Sbjct 105000 ATGGCCA 105006 >seq892 Length=133947 Score = 104 bits (114), Expect = 4e-17 Identities = 70/77 (91%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 169732 TGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCC 169791 ||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||| Sbjct 95917 TGTAGCTCAGTTGGT-TAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCC 95975 Query 169792 GTCAGTCCTGCCATTTT 169808 |||| || |||| ||| Sbjct 95976 GTCACTCGCGCCACTTT 95992 >seq5294 Length=478 Score = 93.3 bits (102), Expect = 7e-14 Identities = 124/171 (73%), Gaps = 6/171 (4%) Strand=Plus/Plus Query 123076 CTGTCAGCTGTATCAGCGCAGTGCTGACATGTTCCTAGGCGTACCGTTTAACATTGCCTC 123135 ||| ||| |||| |||||||| | ||||| ||||| ||||| ||||| ||||| ||| Sbjct 254 CTGCCAGTTGTACCAGCGCAGCGGCGACATCTTCCTGGGCGTGCCGTTCAACATCGCCAG 313 Query 123136 TTACGCGCTCCTGATACACATGTTTGCCCAGCAGGCCAATA---TGGCAGTAGGTGACTT 123192 ||||| || || | |||||| | || |||||||| ||| || || ||||| Sbjct 314 CTACGCACTGCTCACCCACATGGTGGC---GCAGGCCACCGGGCTGGGCGTGGGCGACTT 370 Query 123193 CGTGTGGACGGGTGGGGATGTGCATCTGTACTCCAACCACCTGGAGCAGGC 123243 |||| || || || | ||||||||||||||||||| | || ||||| Sbjct 371 CGTGCATACCCTGGGCGACGCGCATCTGTACTCCAACCACGTTGACCAGGC 421 >seq5955 Length=632 Score = 89.7 bits (98), Expect = 8e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 123074 TCCTGTCAGCTGTATCAGCGCAGTGCTGACATGTTCCTAGGCGTACCGTTTAACATTGCC 123133 || |||||||||||||||||||| || ||||||||||| || || ||||| ||||| ||| Sbjct 347 TCGTGTCAGCTGTATCAGCGCAGCGCCGACATGTTCCTCGGTGTGCCGTTCAACATCGCC 288 Query 123134 TCTTACGCGCTCCTGATACACATGTTTGCCCAGCAGG 123170 || ||||| | |||| ||| | |||||||||| Sbjct 287 TCCTACGCCTTGCTGACCATGATGATCGCCCAGCAGG 251 >seq1364 Length=121373 Score = 89.7 bits (98), Expect = 8e-13 Identities = 68/79 (86%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 169733 GTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCCG 169792 |||| |||| |||| |||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 46654 GTAGTTCAGCTGGT-TAGAATGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGTCCCG 46596 Query 169793 TCAGTCCTGCCATTTTTAA 169811 || | | || | |||||| Sbjct 46595 TCCGGTCCGCAAGTTTTAA 46577 Score = 86.0 bits (94), Expect = 1e-11 Identities = 57/62 (92%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 169733 GTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCCG 169792 |||| |||| |||| |||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 48770 GTAGTTCAGCTGGT-TAGAATGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGTCCCG 48712 Query 169793 TC 169794 || Sbjct 48711 TC 48710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 777501921607200