Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_019932.1 Length=29564 Score E Sequences producing significant alignments: (Bits) Value seq12163 190 4e-44 seq9435 179 7e-41 seq3006 150 3e-32 seq3418 136 7e-28 seq7034 80.6 5e-11 >seq12163 Length=619 Score = 190 bits (210), Expect = 4e-44 Identities = 438/644 (68%), Gaps = 46/644 (7%) Strand=Plus/Minus Query 11195 CAGAGCTACACCGGCAACCTGTATCTCGATGAATATTTCTGGA--TACCGAAATTCCAGG 11252 ||| ||||| ||| || | || |||| |||| ||||||| ||| | ||| | Sbjct 619 CAGGGCTACCACGGGAATTTCTACTTCGACGAATTCTTCTGGACCTACGGC--TTCAACC 562 Query 11253 AGCTGCGAAAGGTCGCCAGCGGCATGTCGCTGCATAAAAAGTGGCGCACCACCTACTTTT 11312 ||||| |||||||||||||||||| || |||| || || ||||||| |||||||| Sbjct 561 AGCTGAACAAGGTCGCCAGCGGCATGGCGATGCACAAGAAATGGCGCAAGACCTACTTCA 502 Query 11313 CCACGCCGTCGAGCCTGTCGCACTCCGCTTATCCGTTCTGGTCGGGCGAGCTGTTCAACA 11372 |||||| || | | || ||||| || || |||||| | ||||||| ||||||| Sbjct 501 GCACGCCTTCCACCATGGCGCACGAAGCCTACGATTTCTGGACAGGCGAGCGCTTCAACA 442 Query 11373 AAGGGCGGCGCAGCAAAGCCGA--TCGCATC-GAAATCGACC--TGTCGCATACGCAC-- 11425 | |||| ||||||| || || | | ||||| | |||| ||| | Sbjct 441 A-GGGC---------AAGCCGACCTCCCAGCAGGTATCGATCGATGTCAGCCACGGCCGG 392 Query 11426 CTGGCAAAAGGCGCGCTGTGCGGTGACGGCCAGTGGCGGCAGATTGTGACGGTTGAGGAT 11485 |||| | ||| | |||| |||| ||||||||||| || || || Sbjct 391 CTGGGCAGTGGCCGACGCTGCGAGGACGCTATCTGGCGGCAGATCGTCACAGT------- 339 Query 11486 GCGCTGACCGGCGGCTGTAACCTGTTTGACCTCGACCAGCTCCAGCTGGAATACAGCCCG 11545 || | ||| ||||| | | | | || ||| | | || | ||| ||||| | Sbjct 338 GCTC-GAC--GCGGCCG-ACCGAGGGTG----CGATCTGTTCGATGTGGNN-ACAGCGCC 288 Query 11546 TCGGAATACCAGAACCTGCTGATGTGTGAGTTTGTGGACGATGAGGCGAGCGTGTTCCCG 11605 ||||| | |||||||||||||| ||||| |||||||| || |||||||||||| Sbjct 287 GAGGAATTCGCCAACCTGCTGATGTGCGAGTTCGTGGACGACAGCGCCAGCGTGTTCCCG 228 Query 11606 TTCGCCGA-GCTGCAGACCTGCATGATCGACAGCCTGGAGGAATGGA---GCGACTTTAA 11661 | | ||| ||||||| | ||| | | |||||| || ||| ||| |||| || | Sbjct 227 CT-GACGATGCTGCAGCCGTGCCAGGTGGACAGCTGGGTGGAGTGGGCCGGCGAGTTCAG 169 Query 11662 CCCGTACCTGCC--GCGCCCGTTTGATTACCGCCCGGTCTGGATTGGCTACGACCCGTCG 11719 ||| | | ||| |||||| | || ||||| |||| |||||||| ||||||||| | Sbjct 168 CCCCTTC--GCCATGCGCCCATATGGCGACCGCGCGGTGTGGATTGGGTACGACCCGGCC 111 Query 11720 CACACCGGCGACAGCGCAGGCTGTGCCGTTATCGCGCCGCCGCTGGTTGCGGGCGGCAAG 11779 | || ||||||||||| ||| | || | |||||||| | || | || |||||| Sbjct 110 GAGACGGGCGACAGCGCCGGCATCGTGATTGTGGCGCCGCCCCAAGTGCCCGGTGGCAAG 51 Query 11780 TTTCGCGTGCTGGAGCGTCACCAGTGGCGGGGCATGGACTTTGC 11823 || |||||||||||||||||||||| |||||||||||| || Sbjct 50 TTCCGCGTGCTGGAGCGTCACCAGTTCAAGGGCATGGACTTCGC 7 >seq9435 Length=520 Score = 179 bits (198), Expect = 7e-41 Identities = 282/401 (70%), Gaps = 12/401 (3%) Strand=Plus/Minus Query 8412 ATGTTTTCCACCAGGCAGCCTGCCGCGTAGTCTTCCACCACGTAGTCCTCGTTGATGGAC 8471 ||||| || |||||| ||| |||||||||| ||||||||||| |||||| ||| Sbjct 489 ATGTTCTCGACCAGGGCGCCACGGCCGTAGTCTTCGACCACGTAGTCGTCGTTGGACGAC 430 Query 8472 TCGTAGTTTTCGATGCGGTCGCGCTTCGGCACCTCGTCGATCAGG---CGGCGGTGCGTG 8528 ||| |||| | | ||||| |||| || || ||||| ||| |||||| | | Sbjct 429 TCGAAGTTCGCCACGCGGTT---CTTCTGCGGCTGCTCGATGAGGTAACGGCGGCG---G 376 Query 8529 CCTTC---CTGCCAGTAAATTGACAGGTTATCGAGGCGCGTAATCATCAGGGCATTGGCC 8585 || || ||||||||| || ||||| || || || || | ||||||||| |||||| Sbjct 375 CCGTCGATCTGCCAGTAGATCGACAGATTGTCCAGCGAGGTGACCATCAGGGCGTTGGCC 316 Query 8586 GGGAAATACGGCACGCGCACGGCAGGCAGGTTGCCGATGCGTTTCTGACTGACAATCAGG 8645 |||| | |||||| ||| | ||||| |||||||| || | | | ||| Sbjct 315 GGGACGAAAGGCACGATCACCGGCTGCAGGCCACCGATGCGCTTAGTGCCCAGCACCAGA 256 Query 8646 TCGGCGGCCAGCTGCTCGGTGTTGGCCTGGCTCTGGTTCACGATGGGGAAATACTTGTCG 8705 || ||||||||||||||||| ||| || || ||| | ||||||||| ||||||||| Sbjct 255 TCCGCGGCCAGCTGCTCGGTCGGCGCCAGGTCCTTGTTGATGATGGGGAAGTACTTGTCG 196 Query 8706 GCCAGCAGCTGACGGCCGCAGATCACAACCAGCTCCGGGTCTTCCTGATACCACGGCTCA 8765 || ||| | ||||| ||| || |||| |||| || | ||| | ||||||||| Sbjct 195 TGCACCAGGTTGCGGCCCAGGATGACCACCAAGCCCGGATCCTGCTGGTGCCACGGCTCG 136 Query 8766 ATCAGGGTGTTGGTGGCGTCCATCACCAGTGCGTCAAGGTT 8806 ||||||||| | ||||| ||||| ||||| ||||| Sbjct 135 ATCAGGGTGGACACCACATCCATAACCAGCGCGTCCAGGTT 95 >seq3006 Length=629 Score = 150 bits (166), Expect = 3e-32 Identities = 331/495 (67%), Gaps = 18/495 (4%) Strand=Plus/Minus Query 25845 TAGCTGTCGGTGATGCGCTGGCGCAGGGTCAAATCTTCCAGCGGCGGCACCGGCGTGTAG 25904 |||| |||||||||||||||| ||| || | |||||||||||||||||| |||||| Sbjct 504 TAGCGGTCGGTGATGCGCTGGTTCAGCAGCAGGTTTTCCAGCGGCGGCACCGGGGTGTAG 445 Query 25905 TCGTAATCAATAAAGAGCTTGCCCGCCTTCAGC-GTGTCTTTATCGTTGGCCGTGTCGTC 25963 ||| | || || || || |||| | || | |||||| ||||| Sbjct 444 TCGAAGTCGATGGCCAGGCGACCACTGGACAGCTGCGTGGGCAG-GTTGGCGCCCTCGTC 386 Query 25964 ATACCAGCACGACGCGCCCAGCAGGTAACCGGCGCTGACCAGCTCGCGGAATTTGGCATT 26023 |||||| || || || |||||||| |||||| | ||||||||||| | Sbjct 385 GTACCAGGCCGTGGCCCCGAGCAGGTATCCGGCGTTCACCAGCTCGCGCTAANNNNNNNN 326 Query 26024 GATGCCCGCGATAATGTCGCGCACCAGTACCGGCGTCAGCGGCTTGTCG---TTGGCCCA 26080 |||||||| || ||||||||||||| | | || | Sbjct 325 NNNNNNNNNNNNNNN----CGCACCAGCGAGGGGTGCAGCGGCTTGTCGACGTAGACCAA 270 Query 26081 CATATGCGCCTCGGCCATCGTGTCGGCAATCACCTGCGCCGTGCGGGTGTAGTTTTCAAA 26140 | ||||||||||| || |||||||| | | |||||||||||||||| || | || || Sbjct 269 C---TGCGCCTCGGCGATGGTGTCGGCCAGGATCTGCGCCGTGCGGGTGGAGGTCTCGAA 213 Query 26141 CGCAAACAGCGGATCGTCGCTACAGGTGCGGTTGCCCCAGAAGCGGAAGCCATCTTTACG 26200 ||||||||||| || ||||| |||||||| |||||||| | | || | Sbjct 212 GGCAAACAGCGGCTCATCGCTGCAGGTGCGCGATCCCCAGAACTTGTACCCGTTGGAGTT 153 Query 26201 GATCAGGGTGGTAACGCATGCCTCGTTGAGCAGGTCGGCGTCGGT-GCCGGTCTGCTGCA 26259 |||||| ||||| | || | ||||||| | |||||||||| ||||| | ||||| Sbjct 152 GATCAGCGTGGTGATATCGGCGGCATTGAGCATGCCGGCGTCGGTCGCCGG-ATCCTGCA 94 Query 26260 AATCCCAGAAGAC--CGAGGCGGAAATGCCGGTCACACCGTTAACGCCAACGTTGGACAG 26317 ||||| ||| | ||| | ||||||||||| ||| ||| | ||||||||||| Sbjct 93 GGTCCCAATGGACGTCCCGGCTG--ATGCCGGTCACGCCGGCTACGGCCACGTTGGACAG 36 Query 26318 GGTTTTGTGCCAGCC 26332 | || |||||||| Sbjct 35 CGACTTATGCCAGCC 21 >seq3418 Length=506 Score = 136 bits (150), Expect = 7e-28 Identities = 252/360 (70%), Gaps = 16/360 (4%) Strand=Plus/Plus Query 12749 ACCAGGAGCTGTACGGCCTGCCGGAAT--ATCTCAGCGCGTTAAACTCTGCCTGGCTGAA 12806 |||||||| ||||||||||||| || | || | || ||| | | ||| || || Sbjct 127 ACCAGGAGGTGTACGGCCTGCCCGAGTGGATGCCGGC-CGTGCAGGCCGCGCTG-CTCAA 184 Query 12807 TGAAGCGGCCACGCTGTTTCGCCGCAAGTATTATCAGAACGGCGCACACGCAGGCTACAT 12866 || ||||||||||||| || |||||||| || | |||||| | ||||| |||| ||| Sbjct 185 CGAGTCGGCCACGCTGTTCCGGCGCAAGTACTACAACAACGGCTCGCACGCCGGCTTCAT 244 Query 12867 CCTGTATATGACCGACGC---GGCGCAGAGCAGCAGCGATATCGACCGGA-TGCGCCAGG 12922 ||| || ||||||| | |||| | | | | | || ||||| ||||| ||| Sbjct 245 CCTCTACCTGACCGATTCCCAGGCGGA-ATCGTCCGACGTA---ACCGGCCTGCGCGAGG 300 Query 12923 CGATGC--GCGACACGAAAGGCCTGGGTAACTTCCGCAATCTGTTTATGTACGCGCCGAA 12980 || | ||| |||| || | ||| |||||||| || ||||| || | |||| || Sbjct 301 CGCTCAAGGCGGCACGT--GGTCCGGGCAACTTCCGGAACCTGTTCGTGCATTCGCCCAA 358 Query 12981 CGGCAAGCCGGACGGAATTAAGATCCTGCCGCTCAGCGAGGTGGCGACGAAAGATGATTT 13040 ||||||| ||||| | ||||| | ||| | |||||||||||| | || ||||| || Sbjct 359 CGGCAAGAAAGACGGTCTGCAGATCATCCCGGTGAGCGAGGTGGCGGCCAAGGATGAGTT 418 Query 13041 CTTTAACATCAAAAAGGCCAGCCGTGACGACCTGCTGAGCGCGCACCGCGTGCCGCCGCA 13100 | |||||||| | | || |||||| ||||| |||| |||||||||||||| Sbjct 419 CGCCAACATCAAGGGCGTGACGCGCGACGACATGCTGGCGGCGCTGCGCGTGCCGCCGCA 478 >seq7034 Length=996 Score = 80.6 bits (88), Expect = 5e-11 Identities = 196/287 (68%), Gaps = 20/287 (7%) Strand=Plus/Plus Query 21405 CGCCCAGGGTGGTGTCATGCCAGGATGTTTCACGGCG--TGAGTTCAGCGTGCCGCGAAA 21462 |||||||||||||||| |||||| ||| || || || | | || ||| | Sbjct 552 CGCCCAGGGTGGTGTCGTGCCAGCTGCGTTCGCGCCGGCTGCGGACGGCA--CCGGTGAG 609 Query 21463 GTCGGCGCTGCGGGCGCGAATGGTCAGCGTGTCCGGTGCGCCGTGATGCTCCACTTCATC 21522 |||||| ||| || || || || || |||| || |||||| |||||||| || || Sbjct 610 GTCGGCAGAGCGCGCACGGATCGTGAGAATGTCAGGCGCGCCGCTGTGCTCCACGTCGTC 669 Query 21523 AACGGTAAACTCACCCTTGTCCGTCAG-CGGCTGCCCCTGCCAGCCGA----GAAA--CA 21575 |||| |||| ||||| || ||| | ||| | | |||| |||| || || Sbjct 670 AACGACAAACGTGCCCTTCTCGAACAGGCCGCTTTCGC-GCCACCCGATGGCGACCTCCA 728 Query 21576 ATTTCACCACCGCACCGCGTACCGGCAGCGCCAGCTGGCCGTCGGCGTCGTCCA-GCTCA 21634 || ||||| |||| ||| | |||| |||||| | || ||| ||||| | || || Sbjct 729 ATGTCACC-CCGCGCCGGG-----GCAGGGCCAGCCGCCCATCGTGGTCGTGGACGCGCA 782 Query 21635 ATATCCAGCTGGTCAGCCTCAAAGCCCCGGTTATCGGTAAGCGTCAG 21681 ||| | ||||||||||||| ||||||| | ||||| || ||||| Sbjct 783 G-ATCGACCTGGTCAGCCTCATCGCCCCGGCTTTCGGTGAGGGTCAG 828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94468185556584