Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_019934.1 Length=39012 Score E Sequences producing significant alignments: (Bits) Value seq2271 286 9e-73 seq3057 145 2e-30 >seq2271 Length=37941 Score = 286 bits (316), Expect = 9e-73 Identities = 356/488 (73%), Gaps = 0/488 (0%) Strand=Plus/Minus Query 22207 ATAGCGGGCCCGTCTGTCGTCCAGCCCGTTCTGCCCACCGTTAATAATCTGCGTGACGCG 22266 ||| || || || | |||||| | |||||||||||||| || || |||||||||||||| Sbjct 7410 ATACCGCGCACGCCGGTCGTCGATGCCGTTCTGCCCACCATTGATGATCTGCGTGACGCG 7351 Query 22267 CAGCAAATCGCCCGGATATTTCAGGCAGCCTTTGCTGGTATAGAACCATGCTGCAGATCG 22326 || || ||||| | || |||| |||||||||| | | ||||||| || || || Sbjct 7350 CACCAGGTCGCCGGTGTACTTCATGCAGCCTTTGGTTGCGAAGAACCACGCCGCGCTGCG 7291 Query 22327 CGCTGCGGTGGCGTCTTTGGAAAGCAGTTCCGGCGAGCTCACAAGGTCAAGTTTCAGCGC 22386 || ||| |||| | | ||||| || ||| | || || || | ||||| | Sbjct 7290 GGCCGCGTATTCGTCCTGCGCCAGCAGCTCAGGCTGCTTAACCAGATCCACCTTCAGGCC 7231 Query 22387 GGCGCCGCAATCGCGGTAATTCTCGAGCCCGGTGATCTGGATGAGCCCGCGTCCGCGATA 22446 |||||| ||||| || || | ||||||||||||||||| |||||||| ||| | || Sbjct 7230 ATTGCCGCAGTCGCGATAGTTGTTCAGCCCGGTGATCTGGATAAGCCCGCGCCCGAGGTA 7171 Query 22447 TTTCCAGCCATCACCCGGGGCGTTATTACCGAGGCGCTTGCTGTAAACCAGATTGGCGAT 22506 |||||| ||| ||| |||| || || | | |||||||| ||||| |||||||| Sbjct 7170 AAACCAGCCGTCAGTCGGACCGTTGTTCCCCATTCTTTTGCTGTACACCAGGTTGGCGAT 7111 Query 22507 CGCGCGCTGGCGTTCAAGGGGCAGCACCTTTTCATACGTGCGGCGGCCCAGCGTGTTGGC 22566 ||| |||||||| || || || | | |||| | || |||||||||| ||| || Sbjct 7110 CGCACGCTGGCGCTCCAGCGGTAACGATGGTTCACCAGCACGACGGCCCAGCGCGTTAGC 7051 Query 22567 CTGATCCTGAGTTAACCGGCCAGCCCGGACAAAATCATTAAGCGCTGCGATGCTGTAGTT 22626 |||| ||||||||| || || | ||||| ||| | ||| |||| | ||||||||| Sbjct 7050 CTGACCCTGAGTTAGGCGCCCGGTACGGACGAAACCTGCCAGCCCTGCTACGCTGTAGTT 6991 Query 22627 GAAGCTCTCTTCCAGCCTGGTAAAGCCGGTGCTTTCATGGCCGACCTGCGCGATGAACAT 22686 |||| | || | ||||| |||||||||||| ||||| |||||||||||||| ||||| Sbjct 6990 GAAGTTTTCCTGCAGCCGGGTAAAGCCGGTAGACTCATGCCCGACCTGCGCGATAAACAT 6931 Query 22687 TGCCTGGT 22694 ||||||| Sbjct 6930 CGCCTGGT 6923 >seq3057 Length=5349 Score = 145 bits (160), Expect = 2e-30 Identities = 464/700 (66%), Gaps = 25/700 (4%) Strand=Plus/Plus Query 36474 GTCGTATAACACGGCGACAGCATTTCCCGCTTCATCTGCCACGCCTGCTGGATACCCTGC 36533 || ||||||||| | || ||||||||| ||||| ||||| | | | | || || Sbjct 3567 GTTGTATAACACTGACTCAACATTTCCCGTTTCATTTGCCATTCAGGGGCGGTTCCTCGC 3626 Query 36534 CCCGCAAAATAGAGCGTTCCCCTGCCCTG-CTGGTTGAGTCTGTCCATC-AGTGA---CA 36588 |||||||| | | | ||||| | || | |||||| ||| |||| |||| || Sbjct 3627 CCCGCAAACCACA-CTTTCCCTTTTCCCGACTGGTTCAGTT----CATCGAGTGTTTTCA 3681 Query 36589 TCAGCGCCTCGCTGTTCGCGCGCGGCGCGTTCTCGTCAAACAGGTTCAGCTGCGCCACGC 36648 | | | || ||||| || ||| | | || ||||| | | ||||||| | | Sbjct 3682 TTAACTTTTCACTGTTTTTACGGGGCTGGATTTCATCAAATAATCCCGGCTGCGCTATAC 3741 Query 36649 CC--TGGCTGAAAAAGTCACCCAGCATAACGCCCGCCTTCTGGTACCGGTGGCCGTCGCG 36706 || ||| || ||| ||| ||||||| || || |||||| || |||| || || || Sbjct 3742 CCGATGG-TGTGAAA-TCAGCCAGCATGACTCCTGCCTTCATATAGCGGTACCCTTCACG 3799 Query 36707 CCAGACC-GCATCAAGGCAGCCCGTCGCCGCGGCGATAATGTCGCGCGTGTCCTGTGTGG 36765 |||||| | | ||||| | | || ||||| |||||||| || |||||||||||| Sbjct 3800 CCAGACATGGTTTAAGGCTCTGCAT-GCGGCGGCAATAATGTCCCGGCTGTCCTGTGTGG 3858 Query 36766 GCGTCAGGAGCTTAGTCCCGGCGTGGTTGCCGTAATACGGTTCAG---CAGAGAACGGCG 36822 || | ||||| | | ||| |||| |||| | ||||| | | || || | Sbjct 3859 GCAATGGAAGCTTTTCCACAGCGGCATTGCTGTAACAGGGTTCTTTTACTGCAAAGGGGG 3918 Query 36823 ACGTTTTCACGAACACCGAAATGTACCGGCAGAACTGATGCTCGCCGCGGAGCTTTTCCG 36882 | || || || || | | |||||| ||||| |||| || || || || || | Sbjct 3919 ATGTCCGTACAAATGTCGTCACCTGCCGGCAATACTGACGCTCCCCACGTAGTTTCTCTG 3978 Query 36883 CCGCGCGCGCTGCATAGCTGCAGAT-AGCCTGGCGCATCGCTTCATAGTCAGTGATTCGC 36941 | || ||| ||||||| ||| | | ||||||| |||| || || | ||| |||||||| Sbjct 3979 CGGCCCGCTCTGCATA-CTGAACAACAGCCTGGTGCATGGCATCTTTGTCTGTGATTCGT 4037 Query 36942 TCCCCGAATGACCGGCTGCAGACGATTTCCTGTTTTGCCGGGGCAAACTCCTCGATCTCC 37001 || || || || || ||||| || | |||||||||||| | || || | Sbjct 4038 TCACCAAAACTGCGACTACAGACAATCTGCTGTTTTGCCGGTGGTGCTTCTTCCAGGGAT 4097 Query 37002 AGACAGGGCTCGCCGCGCAGCTCGCGCACGGTGCGCTCCAGCACGACGTTAAAGTGTTTG 37061 | |||| ||||||| || ||||| || || ||||| || | |||| | |||| ||| Sbjct 4098 ATGCAGGACTCGCCGTTGAGTTCGCGTACCGTACGCTCAAGAATGACGCTGAAGTTTTTC 4157 Query 37062 CGGAT-AAAGCGGATGTCGGTATCACAGAGCTGCAGTGCATTTTTAATACTCATTGCCTC 37120 ||||| || || | ||| | | ||||||||||| | ||||||| || || | Sbjct 4158 CGGATGAATGCCG-TGTTAGCCTGCGCCAGCTGCAGTGCTGTGTTAATACCCAGCGCATT 4216 Query 37121 CAGC-TTTCTGGCAATACGCCGGCCGACGCCCCAGACTTC 37159 |||| |||| | || | | || || || |||||||| || Sbjct 4217 CAGCTTTTCCGTCAGT-CTGCGTCCTACTCCCCAGACCTC 4255 Score = 89.7 bits (98), Expect = 1e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 37448 CATCACCCGCTGGCTCATGTCGCCATAGAGTTCATAGTTGCTGGAGAAGGCAATGATCCG 37507 ||| ||||| ||||||||| | || || |||| |||||||| || || || Sbjct 4550 CATGACCCGTTGGCTCATGCTGTGGTACAGCGCATAATTGCTGGAAAATACATGTATTTT 4609 Query 37508 CTGCGGAAACTGCATCTCGCGCAGCTGGAACCAGGGCATGCCCATTTTTATGCCAAGCGC 37567 || | | |||||| | || ||| ||||||||| |||||| | |||||||| || Sbjct 4610 CTTCTCCAGGCGCATCTGTCTCACCTGAAACCAGGGCTGCCCCATTCTGATGCCAAGGGC 4669 Query 37568 TTTGGCTTCGCGGCTGCGTGCTATCACACAGCCATCATTATT 37609 ||| || || ||||||| || |||||||||||||| ||||| Sbjct 4670 TTTTGCCTCCGGGCTGCGCGCGATCACACAGCCATCGTTATT 4711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124696981097416