Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_020079.1 Length=147737 Score E Sequences producing significant alignments: (Bits) Value seq463 93.3 4e-14 seq126 84.2 2e-11 >seq463 Length=142788 Score = 93.3 bits (102), Expect = 4e-14 Identities = 215/319 (67%), Gaps = 10/319 (3%) Strand=Plus/Minus Query 39736 GCTCGCGCATGATCCTCAACAAAAAGCCAGTCTCGCACCTGGTCGCCTTTACCATACACC 39795 || |||||||||||||| || || ||||| || || || | ||||| || || || Sbjct 138755 GCCCGCGCATGATCCTCGACGAACAGCCAATCGCGGACATTTGCGCCTGCGCCGTAAACG 138696 Query 39796 GG-AATCTCTTTATTCGTCAAGATACTTGTGA-TGATTTTTGGGATCAGCTTTTCTGGAT 39853 || || ||| || || || ||| || | | ||| || |||||||| ||| Sbjct 138695 GGCAAAGGCTTC--TCATCGAGCGCATTGAGAATAACAAGTGGAATGAGCTTTTCCGGAA 138638 Query 39854 GTTGATAAGGCCCAAAGTTATTGGAGCAGTTGGTTATCACAACAGGCAAATCGTAGGTGC 39913 || | || ||| | || || |||||||| | | || || |||| | | || || Sbjct 138637 AATGGAAGGGACCATAATTGTTCGAGCAGTTCGACAGAACCACCGGCAGACCATATGTCT 138578 Query 39914 GGTGCCAAGCTTTCACAAGATGGTCAGATGCTGCCTTAGACGCACTGTACGGGCTTGAAG 39973 |||||| || || |||||||| || |||||||| ||||| |||||| ||| | Sbjct 138577 CGTGCCACGCGCGGACCAGATGGTCCGAGGCTGCCTTTGACGCCGAGTACGGAGATGACG 138518 Query 39974 GGGCATAAGCTGTCTCTTCGGTAAAGGGAACGCCAGAGTC---TGCCATATCGCCGTACA 40030 | ||||||| || |||||||||||| | ||| ||| || || ||| ||| | | Sbjct 138517 GTGCATAAGGCGTTTCTTCGGTAAAG---ATGCCGCTGTCGAATGGCAAATCCCCGAAAA 138461 Query 40031 CTTCGTCTGTGGAGACGTG 40049 | ||||| ||||| | ||| Sbjct 138460 CCTCGTCCGTGGAAATGTG 138442 >seq126 Length=461790 Score = 84.2 bits (92), Expect = 2e-11 Identities = 104/141 (74%), Gaps = 6/141 (4%) Strand=Plus/Plus Query 38848 TGCACGTTGAATAACAGAGTTATCATAGAAATACAAACCTGTGACAGCATAATCTGATTT 38907 |||| || || ||||| |||||||| ||||| || |||| || ||||||| |||||| Sbjct 306224 TGCAATTTCAACTACAGAATTATCATAAAAATATAATCCTGGAACTGCATAATTTGATTT 306283 Query 38908 AGGATTTTCA---GGTTTCTCTTCAATAGAAATAGCTTGACGATTACTCCCAAATTCAAC 38964 || |||| ||||||||||| || |||||||| | ||| |||||||||| Sbjct 306284 TGG---TTCAAGCGGTTTCTCTTCTATCGAAATAGCATTTTTATTTTCATCAAATTCAAC 306340 Query 38965 CACACCGAATCGTTCAGGATC 38985 ||||| ||| ||| ||||| Sbjct 306341 TACACCATATCTTTCTGGATC 306361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472551340749840