Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq232 242 2e-59 seq2491 118 5e-22 seq32 105 3e-18 >seq232 Length=384298 Score = 242 bits (268), Expect = 2e-59 Identities = 335/469 (71%), Gaps = 0/469 (0%) Strand=Plus/Minus Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947 ||||||||| | |||| |||| | || || || ||| | ||| || ||||||| Sbjct 340875 ATTTGGACACATTAAAGTCCAAGTTGAATCTTCCTGAACACGTTTCATGAACAAATCTGA 340816 Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007 | ||||||| || | ||||||||||| || | ||||||||||||||| ||| || || Sbjct 340815 AGTCCACATGGCGAAGAATAAATCTCTTGCACGCATTTCTTCTTTTCCTGTATTTTTCTT 340756 Query 26008 TAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC 26067 || ||| ||||||||||||||||| | ||||| | ||| | || || ||||||||||| Sbjct 340755 TAAATCCAAGAAATCAAAAATATCAGCATGCCAGGTTTCGATGTAAATTGCAAAACTACC 340696 Query 26068 TTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACAT 26127 ||| | |||||| || |||||||||||||| | || || || ||||||||| ||||||| Sbjct 340695 TTTACGTTTTCCGCCGCCTTGATCTACGTAACGCGCTGTATCGTTGAAAACTCTCAACAT 340636 Query 26128 TGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAAT 26187 ||||| | ||| ||||| ||||||||| | |||| | ||||| |||| | | Sbjct 340635 CGGAACAATTCCGTTTGAAGTTCCGTTTGTACCGCGAATGTAAGATCCAGTCGCACGTAC 340576 Query 26188 ATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAAC 26247 | ||| | || || ||||| ||||| | | || || ||| | | | Sbjct 340575 GTTATGAATAGAAAGTCCAATTCCTCCAGCTGACTGCGAGATTTTTGCGGTTTGTTTTAA 340516 Query 26248 TGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAA 26307 ||||| |||| || | || |||||| | | |||| | | ||| ||||||||||| | Sbjct 340515 GGTATCATAAATACCATCAATACTATCATCCTGCATTGCAAGTAAGAAACAAGAAGACAT 340456 Query 26308 TTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTA 26356 ||||| | | ||||||| |||||| || || || || ||||| ||| Sbjct 340455 TTGCGGTTTTGGAGTTCCTGCATTAAACAACGTTGGCGTTGCATGCGTA 340407 Score = 125 bits (138), Expect = 4e-24 Identities = 300/450 (67%), Gaps = 8/450 (2%) Strand=Plus/Minus Query 24682 TACTGCTGGTTTAGTTCTAAGATAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTA 24741 ||| |||| ||| ||||| || ||||||||||| ||||| || || |||| |||| Sbjct 342054 TACAGCTGCTTTTGTTCTTAGGTAATACATTCCTGTTTTTAAACCAGACTGCCAAGCGTA 341995 Query 24742 AAAATGCATTGATGTTAGTTTTGCAATGTTTGCTGATTCTAAA--AACAAGTTCATCGAT 24799 || |||||||| || ||||| | | ||| || || || | |||||||| | || Sbjct 341994 GAAGTGCATTGAAGTAAGTTTAGAATAGTTGGC--ATCCTGCATGAACAAGTTTAATGAC 341937 Query 24800 TGAGCTTGGCAAACAAAACGTTGTCTATCTGC--AGCTAAGTCAATGATCGTTTTCATCG 24857 |||| || | ||| || || |||| || | || || || |||||||| Sbjct 341936 TGAGACTGATCGATAAA--GTATCCTCTCTGGCGAGACATATCGATAATATCTTTCATCG 341879 Query 24858 ATATATCGTAAGCTGTTTTGTATCTCTCTTTTATCTCAGTTGGAATACTTGCAATATTTT 24917 | || || || |||||||||| ||||||| || |||||| | |||| |||| Sbjct 341878 ACATTTCCCAAACTGTTTTGTACAGTTCTTTTAAGTCTTGCGGAATAATATCAATGTTTT 341819 Query 24918 GAACTGATCCATTTTCTCTCAATAGATTCAATCTCATATTCGGTGTCCAAAGATTAATTT 24977 |||| |||||||| | | || | | | | ||| | |||| | ||| Sbjct 341818 GAACAGATCCATTATGACGCATGATTTCCTGTTTCAACGACTCATTCCATAATCCTCTTT 341759 Query 24978 TTTCAAGATCTCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTC 25037 | | | ||| || || ||||| |||| | |||||||||||||| | || | | Sbjct 341758 CTACTAAATCGTGAAGTAAATGTTTGTTTACCACGATAAATTCTCCAGATAGTACACGAC 341699 Query 25038 TTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAG 25097 | | | ||||||||| ||||||| ||| ||| || |||||||| || ||||||| Sbjct 341698 GAGTGTAAATGTTTGAAGTATATGGTTCGAAAGCTTCGTTGTTTCCTAAAATCTGAGAAG 341639 Query 25098 TAGATGCTGTTGGCATTAATGCTATTAATA 25127 | ||||||||||||||| || | ||||| Sbjct 341638 TCGATGCTGTTGGCATTGGCGCCACTAATA 341609 >seq2491 Length=10632 Score = 118 bits (130), Expect = 5e-22 Identities = 324/487 (67%), Gaps = 12/487 (2%) Strand=Plus/Minus Query 25892 GGACAGAATAAATGCCAATCAGCATTTTGCTCAACT-TTCTCCATAAATAAATCTGGAAT 25950 |||||||||||| ||| || | |||| || || ||||| || || | || | Sbjct 6094 GGACAGAATAAACTCCAGTCTCCGTTTTCTTCTACCCTTCTC-ATGAACAGGTCACATAC 6036 Query 25951 CCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAG 26010 ||| | ||||| ||||||||||| || | | ||||||||| || || || || || Sbjct 6035 CCAAAGGGCATAGAATAAATCTCTGGCACGAAGTTCTTCTTTACCATGGTTTTTACGCAG 5976 Query 26011 ATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTT 26070 || | ||| | | ||||| |||||||| || | || || |||||| |||||| Sbjct 5975 GTCCAGAAAACTCAGCACATCTGCATGCCATGGCTCCAGGTAAATGGCAAAAGCACCTTT 5916 Query 26071 TCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGG 26130 | ||| |||||||| || || || || | || || || || || ||||||||||| || Sbjct 5915 ACGTTTACCTCCACCCTGGTCCACATAACGGGCGGTATCGTTAAATACTTTCAACATAGG 5856 Query 26131 AACTAATCCAGTTGAAAAT-CCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATAT 26189 || ||||| ||| | |||||||| | | ||| | ||||| || | | || | Sbjct 5855 TAC-AATCCCATTGCTGGTCCCGTTTGTTCCACCAATATAAGATCCCGTGGCACGGATGT 5797 Query 26190 CGT-GAGCATGAATACCGATTCCACCAGCCCATTTTGAAA---TAGCTGCACAATCTGAA 26245 | || | || ||| || ||||| || | || ||||| |||| | | | || Sbjct 5796 TATGGATGCTTAA-ACCAATACCACCTGCGCTTTGTGAAATTTTAGCGGTTTGTTTTAAA 5738 Query 26246 ACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGAT 26305 |||||| ||||||||| || || || | | ||| | |||||| || ||||| Sbjct 5737 ---GTATCGTAAATTCCTTCAATACTGTCGTCCTGCATGGTCAGTAAAAAGCAGGAAGAC 5681 Query 26306 AATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATCCT 26365 | ||| | | || || ||| ||||||||| || || || ||||| ||| | | | Sbjct 5680 ATTTGAGGTTTAGGGGTAGCTGCATTAAATAAAGTTGGGGTTGCATGCGTAAACCAGCGC 5621 Query 26366 TCACTCA 26372 ||||||| Sbjct 5620 TCACTCA 5614 >seq32 Length=13759 Score = 105 bits (116), Expect = 3e-18 Identities = 188/272 (69%), Gaps = 2/272 (1%) Strand=Plus/Plus Query 25889 TTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGA 25948 || || ||||| || ||| || |||| ||||||| |||||| || | ||||||| Sbjct 3971 TTGGGGCAGAACAATGCCCACTCCTCATTGCGCTCAACACGCTCCATGAAGAGATCTGGA 4030 Query 25949 ATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTT 26008 ||||| | ||||| || || || | || | ||| || || || ||||| ||||| Sbjct 4031 ATCCAGAGGGCATAGAACAAGTCACGAGCACGCATCTCCTCCTTGCCGTGGTTCTTGCGG 4090 Query 26009 AGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCT 26068 || || | ||| ||||| | || | ||||||||| || | |||| ||||| ||| Sbjct 4091 AGGTCGAGGAACTCAAAGACGTCGGCGTGCCATGGCTCGAGGTAGACTGCAAATGCACCC 4150 Query 26069 TTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATT 26128 || | ||||| |||||||| || || || | ||||| || ||||| || | ||| Sbjct 4151 TTGCGCTTTCCGCCACCTTGGTCGACATAGCGGGCAGTGTCGTTGAACACACGGAGCATG 4210 Query 26129 GGAACTAATCCAGTTGAAAAT-CCGTTTGTGC 26159 || |||| || |||| | | ||||| |||| Sbjct 4211 GGGACTAGACC-GTTGGAGGTGCCGTTGGTGC 4241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252998730915650