Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq1242 170 2e-37 seq1326 109 6e-19 seq126 84.2 3e-11 >seq1242 Length=39269 Score = 170 bits (188), Expect = 2e-37 Identities = 272/386 (70%), Gaps = 6/386 (2%) Strand=Plus/Minus Query 138171 AGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAG 138230 || |||||||| ||||| |||||||| | ||||||||| ||||| || |||||||| || Sbjct 15655 AGGTGTTTTGCAACACCGATAGGACCCATGCCAGGACCACCACCACCGTGTGGAATGCAA 15596 Query 138231 AATGTCTTATGTAAATTTAGATGACATACATCTGCACC-ATAGTCACATGGTTTTGCTAG 138289 || || || || | || || ||||| || || ||||| ||| | | || | | || Sbjct 15595 AAAGTTTTGTGCAGGTTCAGGTGACAGACGTCAGCACCGATA-TGTCCGGGACTGGTTAA 15537 Query 138290 ACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAAC 138349 |||||| |||||||| | |||||||||||| | ||| ||||| || || || ||||| | Sbjct 15536 ACCTACTTGTGCATTCATATTTGCACCATCCATATAAACCTGTCCTCCGTTTTCATGGAT 15477 Query 138350 GATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAAT 138409 ||| || || || | | ||| || ||| || |||||||| || || || || || | Sbjct 15476 GATGTTGCAGATGTCAATAATGCTTTCTTCGAACACACCATGGGTAGAAGGGTAAGTGAC 15417 Query 138410 CATAATACATGAGAGTTCAAATGTAT--TCATGATTGCTTTCTTCTCTAGATCTTTGATG 138467 ||| | ||| || || ||| | ||| || || ||||| | || || | | Sbjct 15416 CATTAAACAGGAAAGCTCATTTTTATGCTCCTG--GGCTTTAGCTTTAAGGTCCTCTACA 15359 Query 138468 TCTATGTTGCCATCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCA 138527 ||||| || || | ||| | | || || |||| ||||||||| ||||| ||||| Sbjct 15358 TCTATATTTCCGTTTTCAAGAGATTTAACGATCACAATTTTCATTCCGGCCATTGCTGCA 15299 Query 138528 CTAGCAGGATTAGTTCCATGTGCTGA 138553 ||| ||||| |||||||| || || Sbjct 15298 GAAGCCGGATTGGTTCCATGAGCAGA 15273 >seq1326 Length=8934 Score = 109 bits (120), Expect = 6e-19 Identities = 340/519 (66%), Gaps = 8/519 (2%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || || || ||||| || || || || || || ||||| ||||| ||||| ||||| || Sbjct 1470 ACGCCGATCGGACCAACACCCGGCCCGCCGCCGCCATGGGGAATGCAGAAGGTCTTGTGC 1411 Query 138243 AAATTTAGATGACATACATCTGCACC-ATAGTCACATGGTTTTGCTAGACCTACCTGTGC 138301 | || | || || ||||| ||||| ||| || | || || || || ||| | || Sbjct 1410 AGGTTCATGTGGCAGACATCGGCACCGATA-TCGCCGGGACGGGCAAGCCCGACCAGCGC 1352 Query 138302 ATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATAT 138361 ||| || || || ||||||| ||| ||||| || |||| | ||||| || | | || || Sbjct 1351 ATTCAGGTTGGCGCCATCGAAATAGACCTGGCCGCCATGCTGATGAATGACCGTGCAGAT 1292 Query 138362 CTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGA 138421 | ||| | | ||| || |||||||| ||||||||||| || ||||| | || Sbjct 1291 ATCCTTGACGCCTTCTTCGAACACACCATGGGTCGATGGATAGGTGATCATCAGTGCTGC 1232 Query 138422 GAGTTCAAATGTATTCATGATTGCTTTCTTCTCTAGATCTTTGATGTCTATGTTGCCATC 138481 ||| | | | | | ||||| || || || | | || || | |||| | Sbjct 1231 GAGATTGGCACTGTGCTGGTCGGCTTTTGCCTTGAGGTCCTCAAGATCGATATCGCCAGC 1172 Query 138482 ATCATCACACTTGACAC--CTACAACTTTCATTCCTGCCATGACTGCACTAGCAGGATTA 138539 || || || || ||| | || || ||| || ||||| ||||| || ||||| Sbjct 1171 CTCTTCGCA--TGCCACGACCACTACCCGCATGCCCGCCATATGGGCACTGGCCGGATTG 1114 Query 138540 GTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCATC-TCCTGATCCTTG 138598 || ||||| || || || || || || || | || | | |||| || ||||| | Sbjct 1113 GTGCCATGCGCCGATTCCGGGATGAGGCAGATATCACGATGCGCATCGCCCCGATCC-AG 1055 Query 138599 ATGATATGCTTGGATTGCTAACAGTCCTGCATACTCACCCTGTGATCCTGCGTTAGGTTG 138658 |||||| | || || | || || ||||| |||||||| || || || || || Sbjct 1054 ATGATAGCGGCGAATGGCCAGGAGACCGGCATATTCACCCTGGCTGCCGGCATTCGGCTG 995 Query 138659 TAATGATATAGAATCAAAACCTGTGATATCACATAACCA 138697 | ||| | | |||||| || ||||| || | ||||| Sbjct 994 CAGTGAAACTGCATCAAAGCCGGTGATCTCGGACAACCA 956 >seq126 Length=461790 Score = 84.2 bits (92), Expect = 3e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 139853 TAACAGCATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGG 139912 |||| ||| || ||||| || || ||| |||||||||||| ||| || ||||| ||| Sbjct 424073 TAACGCCATAGCTTCTGCAGCAGCCGTTCCTTCATCTAATAAAGAAGCATTTGCGATTTC 424014 Query 139913 TAATCCTGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTG 139972 | ||| || | || | | | || ||| |||| || | |||||| || | || || Sbjct 424013 CATTCCAGTTAACTCGATAACGGTAGTCTGGAAATTCAAAATAGCTTCTAAACGACCTTG 423954 Query 139973 AGATATCTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTT 140032 || || || || ||||| || ||||||| || ||||| | ||||| || | | ||| Sbjct 423953 AGCAATTTCTGCCTGATAAGGTGTGTAAGCCGTATACCATCCTGGATTTTCGAAGATGTT 423894 Query 140033 TCGCTGTAT 140041 || ||| || Sbjct 423893 TCTCTGAAT 423885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578901548042640