Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq126 297 3e-75 seq76 192 8e-44 seq436 156 6e-33 seq734 116 5e-21 seq445 96.9 5e-15 seq446 95.1 2e-14 seq136 93.3 6e-14 >seq126 Length=461790 Score = 297 bits (328), Expect = 3e-75 Identities = 531/767 (69%), Gaps = 39/767 (5%) Strand=Plus/Plus Query 47788 CCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCG 47847 || || ||||| ||| |||| ||||||| ||||| || | || | |||||||||||| Sbjct 313437 CCAGTTGCAATTACATAATCTTCAGGTTGATCTTGCTGCAAAATCAGCCACATAGCCTCA 313496 Query 47848 ACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAG 47907 ||||||||| | ||||| ||||| || | ||||| | ||||||| | ||||| Sbjct 313497 ACATAATCTTTTGCATGCCCCCAATCTCTTCTCGCATCTAAGTTTCCTAAAAATAAATTA 313556 Query 47908 TCTTGCTTACCTTCAGAGATTGCTTTTAAT--GCTCTTGTAATCTTACGAGTTACAAAAG 47965 || ||| ||||| | ||| || || ||||| ||||| |||||||| ||||||| Sbjct 313557 TCCTGCATACCTAATGCCATT--TTAGAAACCGCTCTAGTAATTTTACGAGTGACAAAAG 313614 Query 47966 TTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGT 48025 |||| || | | ||| |||||||||||| | ||||||| | || ||| |||| || | Sbjct 313615 TTTCTCCTCTTAAAGGACTTTCATGATTAAATAAAATACCATTGCACGCAAACATACCAT 313674 Query 48026 ATGATTCACGATAGTT--CTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGG 48083 ||| ||| | ||| || | || ||||| || |||| | ||||||||| ||||||| Sbjct 313675 ATGCTTCTCTATAATTTACGGTA--ATCCAATAAGCATACATTTTTGCAACTGCATAAGG 313732 Query 48084 AGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAG 48143 |||||| ||||| ||||| ||| | |||| || ||| | || || ||||| | Sbjct 313733 AGAACGAGGATAAAAAGGAGTGCTTTCTGATTGAGGAACTGCCTGAACTAAGCCATACAA 313792 Query 48144 TTCACTGGTGGATGCTTGATAGA--TACGAACCCTATCTTCCATCTCAAGCAAACGGACT 48201 ||| || || |||||||| | | | || | || || || || | ||| | | Sbjct 313793 CTCAGATGTAGAAGCTTGATATATTTTGGTTTTCTTTGTTAAAT-TC-AGGATACGCATT 313850 Query 48202 GCCTCAAGCACTCTCAGGGTGCCTATGGCATCTGTCTGACCAGTATACTCGGGCATCTCA 48261 || || | | | | || ||||| |||| | | | ||||||| || || | ||| Sbjct 313851 GCTTCTAATAAGCGTAAAGTTCCTATACCATCAGCATTAGCAGTATATTCTGGAGTATCA 313910 Query 48262 AACGAAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTCATCTGGTTGAACCTGC 48321 || || ||||| |||||| || |||||||||||||| ||||||||||| || | Sbjct 313911 AAACTTACTTTTACGTGACTCATCGCACCAAGATTATAAATTTCATCTGGTTGTACTTCT 313970 Query 48322 TGAATAACCCTCACTAAATTTGTAGAGTCTGTTAAGTCTCCATAATGCAATTTTA----- 48376 || |||| || | |||||| || ||||| |||| ||||||||||||||||| | Sbjct 313971 TGTATAATTCTTATTAAATTAGTTGAGTCACTTAAATCTCCATAATGCAATTTAAAACGT 314030 Query 48377 --ATT-----------GATC-----ATAAATGTGATCAATTCTATGTGTATTAATTAAAG 48418 ||| |||| ||||| |||||||| | || |||||||| || || Sbjct 314031 ACATTTTCTTCATGAGGATCTTGGTATAAA--TGATCAATACGATCTGTATTAAATAGAG 314088 Query 48419 AAGCCCGACGGACAATACCATGAACCTCATA-CCCCTTTTCAAGAAGAAGTTCTGCTAAG 48477 || ||||| |||||| ||||| || || || |||| || || || || ||||| Sbjct 314089 AACTACGACGTTTAATACCGTGAACTTCGTATCCTTTTTTTAATAATAA-ATCAGCTAAA 314147 Query 48478 TATGAACCATCTTGTCCTGTAATACCAGTGATTAAAGCAACTTTCAT 48524 |||| |||||||| |||||||| || || || | || | |||||| Sbjct 314148 TATGCCCCATCTTGACCTGTAATTCCTGTTATAAGTGCTATTTTCAT 314194 Score = 102 bits (112), Expect = 1e-16 Identities = 224/336 (67%), Gaps = 0/336 (0%) Strand=Plus/Plus Query 47013 TCAAAATTATCATTTGGACCATATAGGTTTGTAGGCATCAAAGAGATAGCATTAAATCCA 47072 ||||| |||||||||| ||||||| || | || || | | || |||| |||||| Sbjct 312496 TCAAATGTATCATTTGGCCCATATAAATTACTCGGGATTAGACTTATTCCATTGAATCCA 312555 Query 47073 TACTGCTGATGGTATGCCTGACACATCTTGATACCAGCAATCTTTGCAATAGCATAAGAA 47132 || || | || ||||| || | | || || || ||||| || | || |||||| Sbjct 312556 TATTGTTTATTGTATGTCTCCAATAATTTTATTCCTGCAATTTTACCTATCGCATAACCT 312615 Query 47133 TCATTACTAGGTTCAAGAGGACCACTCATTAGATATTCTTCCCTAATAGGTTGTTCACAT 47192 |||||| | ||||| | ||| | ||||||||||| | || ||||| ||| Sbjct 312616 TCATTAGTTGGTTCTAATTTACCGTCTAAAAGATATTCTTCTTTCATTGGTTGAGCACTA 312675 Query 47193 AATTTTGGATAAATGCAGGAAGAACCAAGAAATAAAAGTTTCTTAACACCAAACTTACGT 47252 ||| |||||||| |||||| ||| ||| | || ||| | || ||| ||| | Sbjct 312676 TCTTTAGGATAAATACAGGAACTCGCAATAAAAACAAATTTTTCTACCCCATTTTTATAT 312735 Query 47253 GCAGAATGAATGATGTTTGATTGAATCATCAAATTATCATAGATGAAGTGTCCGGGATAA 47312 | |||| || | |||| ||| || || ||||||||||| | ||| | |||| | Sbjct 312736 GATGAATTAACAACATTTGCTTGCATAATTAAATTATCATATAAGAATATAGCTGGATTA 312795 Query 47313 TCCTTATTAGCACCAATACCACCCACCTTTGCAGCA 47348 || | || || ||||| || |||||||| ||| Sbjct 312796 TCAATGTTTGCTTTTATACCTCCAACCTTTGCCGCA 312831 >seq76 Length=330973 Score = 192 bits (212), Expect = 8e-44 Identities = 527/798 (66%), Gaps = 36/798 (5%) Strand=Plus/Plus Query 47755 TCCTCAACAAACTGACGGACAGAATATTGAT--TTCCTGTGGCAATAACAAAATCATCAG 47812 |||||| |||| | |||||||| || || | | ||||| ||||| ||||| || || | Sbjct 238433 TCCTCA-CAAAATCACGGACAG--TAGTGGTAATCCCTGTTGCAATCACAAAGTCTTCTG 238489 Query 47813 GTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATCTCTGGCATGTCCCCAGT 47872 || ||| || ||||| || |||||||| || |||| ||||||| | ||||||||||||| Sbjct 238490 CTTTTTCCTGCTGAAGGATCAACCACATGGCTTCGATATAATCTTTAGCATGTCCCCAGT 238549 Query 47873 CACGAAGTGC--ATCAAGATTTCCTAGATATAAACAGTCTTGCTTACCTTCAGAGATTGC 47930 |||| | || || ||| || |||| ||||||||| | || || | ||| Sbjct 238550 CACGCTGCGCTGAT-AAG-TTACCTAAATATAAACAATTCTGAAGTCCCAAGGCAATTTT 238607 Query 47931 TTTTAATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATG 47990 | ||| | ||||| || || || ||||||||||| || | | || |||||| Sbjct 238608 CGCTGCTGCACGGGTAATTTTTCGGGTCACAAAAGTTTCTCCTCTTAAAGGGCTTTCATG 238667 Query 47991 ATTAAAAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTT--CTTTACT 48048 ||| || | ||| ||| |||| || ||||| || | ||||||||| || | || Sbjct 238668 ATTGAATAAAATCCCATTACAAGCGTACATGTTATAAGCTTCACGATAATTTACCGTA-- 238725 Query 48049 ATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTC 48108 |||||||| |||| | ||| || || |||||||||| | ||||| || || || || Sbjct 238726 ATCCAGTAGGCATACATTTTGGCCACTGCATAAGGAGACCTGGGATAAAACGGCGTCGTT 238785 Query 48109 TCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAGATA 48168 || | || ||| | | |||||| |||||| | |||| || || || ||||| || Sbjct 238786 TCACTTTGGGGAACCGCCTGCACCAAACCATACAATTCAGAAGTAGAGGCCTGATATATT 238845 Query 48169 CGAACCCTATCTTCCATCTCAAGCAAACGGACTGCCTCAAGCACTCTCAGGGTGCCTATG 48228 | | | ||||| | | | || | || || || | || | || || || Sbjct 238846 CTGGTTTTTTTCTCCATACCCAAAATCCGTATGGCTTCCAGGAGCCTTAATGTCCCGATA 238905 Query 48229 GCATCTGTCTGACCAGTATACTCGGGCATCTCAAACGAAACCTTTACATGACTCTGTGCC 48288 |||| | | | ||||| || ||||| || || || | ||||| ||| || Sbjct 238906 CCATCCGCATTCGCCGTATATTCCGGCATTTCGAAACTCACATGAACATGGCTCATGGCT 238965 Query 48289 CCAAGATTATAAATCTCATCTGGTTGAACCTGCTGAATAACCCTCACTAAATTTGTAGAG 48348 | || |||||||| || ||||| || | || |||| | | ||| || ||||| Sbjct 238966 GCCAGGTTATAAATTTCGTCTGGCTGGGTTTCTTGTATAATGCGGATTAAGTTGGTAGAA 239025 Query 48349 TCTGTTAAGTCTCCATAATGCA----------------ATTTTAAT--TGATC---ATAA 48387 || || | || ||| |||||| ||||| || || || ||| Sbjct 239026 TCGGTCAGATCCCCAAAATGCAGTTTAAAATTCACGCCATTTTCATGCTGGTCCTGATAC 239085 Query 48388 ATGTGATCAATTCTATGTGTATTAATTAAAGAAGCCCGACGGACAATACCATGAACCTCA 48447 | |||||||| | || |||||||| ||||||| || | | |||||||| | Sbjct 239086 AAATGATCAATACGATCTGTATTAAACAAAGAAGATCGTCTTTTTAGTCCATGAACAAAA 239145 Query 48448 TA-CCCCTTTTCAAGAAGAAGTTCTGCTAAGTATGAACCATCTTGTCCTGTAATACCAGT 48506 || || ||||||| ||||| |||||| | || | |||||| || || || | || || Sbjct 239146 TATCCTTTTTTCAATAAGAA-TTCTGCAAGATAGGCACCATCCTGACCCGTTACCCCTGT 239204 Query 48507 GATTAAAGCAACTTTCAT 48524 ||||||||| || ||||| Sbjct 239205 GATTAAAGCTACCTTCAT 239222 >seq436 Length=26271 Score = 156 bits (172), Expect = 6e-33 Identities = 218/303 (72%), Gaps = 12/303 (4%) Strand=Plus/Minus Query 48075 ACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTT 48134 |||||| |||||||| |||||||| || |||||||||| ||||||||||| | ||||| Sbjct 14259 ACCATATGGAGAACGAGGATAGAATGGAGTGGTCTCTGATTGTGGAGTCTCACGAACCTT 14200 Query 48135 ACCATAAAGTTCACTGGTGGATGCTTGATAGATACGAACCCTATCTTCCATCTCAAG--- 48191 ||||| | |||||||||||||||||||| |||| || ||| | |||| || Sbjct 14199 TCCATACAACTCACTGGTGGATGCTTGATA-----GAACTTTA-CTTTCTTCTCGAGGCC 14146 Query 48192 -CAA--ACGGACTGCCTCAAGCACTCTCAGGGTGCCTATGGCATCTGTCTGACCAGTATA 48248 ||| ||| | || ||||| | | || || | | |||| | | | ||||| Sbjct 14145 ACAACTACGAATAGCATCAAGGATACGGAGACATCCAACGCCATCAACATCAGCTGTATA 14086 Query 48249 CTCGGGCATCTCAAACGAAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTCATC 48308 ||||| ||| || || || ||||| ||||| |||||||| || |||||||| ||||| Sbjct 14085 CTCGGACATATCGAATGACACCTTGACATGGCTCTGTGCACCCAGATTATATATCTCTGT 14026 Query 48309 TGGTTGAACCTGCTGAATAACCCTCACTAAATTTGTAGAGTCTGTTAAGTCTCCATAATG 48368 ||| | ||||| ||| | | ||| | |||||||| || || ||||| |||| ||| Sbjct 14025 TGGATTAACCTTACTAATGATACCCACAAGGTTTGTAGAATCAGTCAAGTCACCATGATG 13966 Query 48369 CAA 48371 || Sbjct 13965 TAA 13963 Score = 98.7 bits (108), Expect = 1e-15 Identities = 219/323 (68%), Gaps = 8/323 (2%) Strand=Plus/Minus Query 47757 CTCAACAAACTGACGGACAGAATATTGATTTCCTGTGGCAATAACAAAATCATCAGGTTC 47816 ||| ||||||| ||| ||||| | | | || | ||||| ||| | || || ||| Sbjct 14680 CTCTACAAACTCACGTACAGAGTGTGTTTGACCGGATGCAATGACATAGTCCTCTGGTCG 14621 Query 47817 TTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATCTCTGGCATGTCCCCAGTCACG 47876 ||| |||| ||||| |||||||| ||||||||||| || | |||||| ||||||||||| Sbjct 14620 GTCTCGTTGCAGCATCAACCACATGGCCTCGACATAGTCACGGGCATGGCCCCAGTCACG 14561 Query 47877 AAGTGCATCAAGATTTCCTAGATATA-AAC--AGTCTTG-CTTACCTTCAGAGATTGCTT 47932 |||| | || || | || | || ||| || | ||| | | ||| Sbjct 14560 CTTGGCATTGATGTTACCCAAGTAGAGCACCTCGTCATGTCCAGTCTTGATA-CGTGCCA 14502 Query 47933 TTAATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGAT 47992 || || || ||||||||||| || || || ||||| | |||||| || |||| Sbjct 14501 CGAA---TCGAGTGATCTTACGAGTGACGAATGTAGGTCCACGACGTGGAGACTCGTGAT 14445 Query 47993 TAAAAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTTACTATCC 48052 |||| | |||||| | || ||||| || || || | ||||||||| || | |||| Sbjct 14444 TAAACAAGATACCATTGCATGCATAAATACCATAAGCTTCACGATAATTGATACACATCC 14385 Query 48053 AGTACCCATAGAGTTTTGCAACA 48075 | || || | |||| |||||| Sbjct 14384 AATATGCAAATTGTTTAGCAACA 14362 >seq734 Length=61306 Score = 116 bits (128), Expect = 5e-21 Identities = 184/258 (71%), Gaps = 8/258 (3%) Strand=Plus/Plus Query 47788 CCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCG 47847 || |||||||||||||| || || || | || ||||| ||||| |||||||||||||| Sbjct 13043 CCAGTGGCAATAACAAAGTCCTCTGGCTTGTCCTGTTGCAGCATCAACCACATAGCCTCT 13102 Query 47848 ACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAG 47907 || || || ||||| || ||||||||||| |||| | || |||||||| | | Sbjct 13103 ACGTAGTCCCTGGCGTGACCCCAGTCACGCTTGGCATTGATGTTACCTAGATAGAGAGTT 13162 Query 47908 TCTTGCTTACCTTCAGAGATTG--CTT--TTAATGCTCTTGTAATCTTACGAGTTACAAA 47963 ||||| | | | || || ||| ||| | || || ||||| ||||| || || Sbjct 13163 TCTTG-TGAGC--CA-AGCTTGACCTTGGCGACATATCGAGTGATCTTGCGAGTGACGAA 13218 Query 47964 AGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCC 48023 || ||| | ||| || || |||||||| || | ||||||| | || ||||| || || Sbjct 13219 TGTCATACCTCTTCTAGGCGACTCATGATTGAACAAAATACCATTGCAAGCATAGATACC 13278 Query 48024 GTATGATTCACGATAGTT 48041 || | ||||||||||| Sbjct 13279 ATAAGCCTCACGATAGTT 13296 >seq445 Length=5314 Score = 96.9 bits (106), Expect = 5e-15 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 53741 TGGAGAATAACGGACTCGAACCGTTGACATCCTACTTGCAAAGCAGGCGCTCTA-CCAAC 53799 |||||||||||||| ||||||||||||| |||| | ||||| |||||||||||| ||| | Sbjct 2005 TGGAGAATAACGGAGTCGAACCGTTGACCTCCTGCGTGCAAGGCAGGCGCTCTAGCCAGC 1946 Query 53800 TGAGCTAATTCCCCA 53814 ||||||||| ||||| Sbjct 1945 TGAGCTAATCCCCCA 1931 >seq446 Length=116643 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 53741 TGGAGAATAACGGACTCGAACCGTTGACATCCTACTTGCAAAGCAGGCGCTCTA-CCAAC 53799 |||||||||||||| ||||||||||||| |||| | ||||| |||||||||||| ||| | Sbjct 2175 TGGAGAATAACGGAGTCGAACCGTTGACCTCCTGCGTGCAAGGCAGGCGCTCTAGCCAGC 2116 Query 53800 TGAGCTAATTCCCC 53813 ||||||||| |||| Sbjct 2115 TGAGCTAATCCCCC 2102 >seq136 Length=398197 Score = 93.3 bits (102), Expect = 6e-14 Identities = 75/88 (85%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 53484 GCGGAGAGGGTGAGATTCGAACTCACGG-AGGCTTTCACCT-CGCTGGTTTTCAAGACCA 53541 |||||| ||||| ||||||||| ||||| ||||| |||||| ||| ||||||||||||| Sbjct 291798 GCGGAGGGGGTGGGATTCGAACCCACGGTAGGCTCTCACCTACGCCGGTTTTCAAGACCG 291857 Query 53542 GAGCCATAAACCACTCGACCACCTCTCC 53569 | ||| |||||| |||| ||||| |||| Sbjct 291858 GTGCCTTAAACCGCTCGGCCACCCCTCC 291885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665383079424240