Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq444 104 4e-17 >seq444 Length=38654 Score = 104 bits (114), Expect = 4e-17 Identities = 165/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | || || |||| || | || | ||| || || || Sbjct 5052 ATTTGCATACCACCACGGAGACGGAGAACCAAGTGAAGAGTGGACTCCTTTTGGATGTTG 4993 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || ||||| | || | | ||| || | ||| || |||||||| || | | ||||| Sbjct 4992 TAATCGGAGAGAGTACGACCATCCTCAAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGG 4933 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || ||||| || || ||||| || ||||| || | || |||||||||||| Sbjct 4932 TCAGGTGGAATTCCCTCCTTGTCTTGGATCTTGGTCTTGACGTTCTCGATAGTATCGGAA 4873 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||| || || | || ||||| || ||||| || ||||| ||||| ||||||||| Sbjct 4872 CCCTCGACCTCCAAGGTAATAGTCTTGCCTGTCAGAGTTTTAACAAAGATTTGCATT 4816 Score = 93.3 bits (102), Expect = 8e-14 Identities = 162/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | ||||| || ||||| | || | ||| || || || Sbjct 5508 ATTTGCATACCACCACGGAGACGAAGAACGAGATGGAGGGTGGACTCCTTTTGGATGTTG 5449 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || ||||| | || | | ||| || | ||| || |||||||| || | | ||||| Sbjct 5448 TAATCGGAGAGAGTACGACCATCCTCAAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGG 5389 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || || || || || ||||| || ||||| || | || |||||||||||| Sbjct 5388 TCAGGTGGGATACCCTCCTTGTCTTGGATCTTGGTCTTGACGTTCTCGATAGTATCGGAA 5329 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || ||||| || || || || || || |||||||| Sbjct 5328 CCTTCGACCTCAAGGGTGATGGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 5273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899503910310240