Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq232 214 3e-50 >seq232 Length=384298 Score = 214 bits (236), Expect = 3e-50 Identities = 604/917 (66%), Gaps = 20/917 (2%) Strand=Plus/Minus Query 17865 TTTTG-TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAA 17923 ||||| || ||| | || ||| || |||||||| || ||||| | | ||| || | | Sbjct 339490 TTTTGATACTCTGCAACACGTTTTTCAAAGAAATTAGTTTTTCCCTGAAGTGAAATCATA 339431 Query 17924 TTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTATAAT 17983 | ||| ||||| |||||||| | | | ||| || ||||| |||| Sbjct 339430 TCCATGAAATCGAATGGATTTGCTGATCCGTAAACACGCTCACAGCCCAATTCTACTAAT 339371 Query 17984 AATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGT 18043 |||||||| || || || || | ||| |||| ||| | | | |||||||| | || Sbjct 339370 AATCTATCGGCAACGAACTCTAAATACTGTGTCATAAGACCAGCGTTCATACCAATTAAA 339311 Query 18044 CTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATG 18103 || | || |||| || | ||||||| | | || || || | || || || || Sbjct 339310 CTTACCGGAAGAGATTCTGTGATAAATTGTCTTTCGATATCTAAAGCATCGACAATAATT 339251 Query 18104 TTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAA-TAAACACGC 18162 | | | | ||| |||||||| ||| || | | || | || | | | ||| ||| Sbjct 339250 TCTTTAATTCTATCTTTTGGCACTTTGTTTACCAAATGGTGATTGTGCAGGTGAAC-CGC 339192 Query 18163 AAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGG 18222 ||||||| |||| |||||| || | || || ||||| ||| || ||||| || || Sbjct 339191 AAAATCACAATGTACACCTTCGTCACGAGAAATCAATTCATTAGAGAATGTTAAACCTGG 339132 Query 18223 CATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACC 18282 ||||| ||| | |||||| | |||| | || || |||| | || || || || || Sbjct 339131 CATTAAACCACGTTTTTTCAACCAATAAATTGAACAGAAAGCTCCCGAGAAAAAGATTCC 339072 Query 18283 CTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGTATCC 18341 ||||| ||| || || || |||| |||||||||||| || || | | |||| Sbjct 339071 TTCAACTGCA-GCAAAAGCAATTAGTCTTTCAGCAAA--TGAATCAGATTCG----ATCC 339019 Query 18342 ATTTTTGTGCCCATTCTCCTTNNNNNNNNATA-CACGGTATACTCTCTATAGCATTAAAC 18400 ||||| ||||||||| ||| || || | | ||| |||| |||||||||| Sbjct 339018 ATTTTAAAGCCCATTCTGCTTTTTTCTTAATTGCAGGAAAAACT-TCTAAAGCATTAAAC 338960 Query 18401 AAATCATCTTTTTCT--TTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTT 18458 || || ||||||| || | ||||||| ||| || || ||||| |||||||| | | Sbjct 338959 AACTCTGATTTTTCTGCTTCG--TCTTTTACATACGTATCAATTAATAAAGAATAAGTCT 338902 Query 18459 CAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATT 18518 || || || | ||||| ||||| |||| |||||| | | || |||| |||| Sbjct 338901 CACTGTGAATATTCTCCATCATGATCTGGAAACCATAAAAGAACTTTGCTTCGGCGTATT 338842 Query 18519 GAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGA 18578 ||| |||| || ||| | || ||| ||| || || || || ||||| | || || | Sbjct 338841 GAACCTCGTTAACAAAATTCTCAGCCAGATTTTCGTTTACGATTCCGTCTGAAGCAGCAA 338782 Query 18579 AAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAG---ATTGTTCCATT 18635 ||||||| |||| || ||||||||||| ||| | || || || ||| ||||| | Sbjct 338781 AAAATGCTAAAATATGTTTAATGAAATAACGTTCGTCGTCATTAAGTTTATTATTCCAAT 338722 Query 18636 CATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTT 18695 | || ||| | || ||| | |||||| | ||||| ||| | ||| | || Sbjct 338721 CTGTTAAATCCTGATGTAAATCGATTTCTTCGGCAGTCCAGAAACTAGCTTCCATTTTTT 338662 Query 18696 TGTACATTTTATAAATATCTTCATGTTGTATAGGAAATAATATATATCGTTTATAATTTT 18755 | ||| || ||||||| | ||||| |||||||| | | | || || | ||||| Sbjct 338661 TATACCATTCCCAAATATCATGATGTTTGATAGGAAAAATAACGAAACGATTTTTATTTT 338602 Query 18756 TTATTAACATAGGTTCT 18772 | ||| || |||||| Sbjct 338601 CTTGTAAGATTGGTTCT 338585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731749576111200