Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq232 122 2e-22 seq444 91.5 3e-13 seq1158 87.8 4e-12 >seq232 Length=384298 Score = 122 bits (134), Expect = 2e-22 Identities = 394/618 (64%), Gaps = 15/618 (2%) Strand=Plus/Minus Query 49827 GCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCT 49886 ||||||||| ||||| ||| ||||| | ||| || ||||||||| || ||||| ||| Sbjct 339193 GCAAAATCACAATGTACACCTTCGTCACGAGAAATCAATTCATTAGAGAATGTTAAACCT 339134 Query 49887 GGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATA 49946 |||||||| || | ||||| | |||| | ||||| ||| | || || || || Sbjct 339133 GGCATTAAACCACGTTTTTTCAACCAATAAATTGAACAGAAAGCTCCCGAGAAAAAGATT 339074 Query 49947 CCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAATATC 50006 || || || ||||| || |||| |||| | || ||| |||| | ||| Sbjct 339073 CCTTCAACTGCAGCAAAAGCAATTAGTCTTTCAGCA------AATGAATCAGATTCGATC 339020 Query 50007 CAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAAT 50066 || |||| |||||| ||||||||||| || || | ||| | | ||||| ||| ||||| Sbjct 339019 CATTTTAAAGCCCATTCTGCTTTTTTCTTAATTGCAGGAAAAACTTCTAAAGCATTAAAC 338960 Query 50067 AATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTTCA 50126 || || |||||| |||||||||||||| | ||| Sbjct 338959 AACTCTGATTTTTCTGCTTCGTCTTTTACATACGTATCAATTAATAAAGAATAAGTCTCA 338900 Query 50127 GAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACTGA 50186 || | | ||||| || || || |||||| ||||||| | || ||| Sbjct 338899 CTGTGAATATTCTCCATCATGATCTGGAAACCATAAAAGAACTTTGCTTCGGCGTATTGA 338840 Query 50187 ACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAG 50246 || ||| || || ||| | | ||| || ||| || || || || || || || Sbjct 338839 ACCTCGTTAACAAAATTCTCAGCCAGATTTTCGTTTACGATTCCGTCTGAAGCAGCAAAA 338780 Query 50247 AATGCTAAAACGTATTTAATAAAAT---GT---TTTTCATTATCTTTTAAATTTTCCCAA 50300 |||||||||| | |||||| |||| || | |||||| ||| ||| | |||| Sbjct 338779 AATGCTAAAATATGTTTAATGAAATAACGTTCGTCGTCATTAAGTTT---ATTATTCCAA 338723 Query 50301 GATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTTT 50360 | | ||| | |||||| | |||||| ||||| || ||| | |||| Sbjct 338722 TCTGTTAAATCCTGATGTAAATCGATTTCTTCGGCAGTCCAGAAACTAGCTTCCATTTTT 338663 Query 50361 TTATACATTTGATATATATCAAAATGTTCAATGGGAAATAGTACATATCGTTTAGTAttt 50420 |||||| || | |||||| ||||| || ||||| | || | || || ||||| Sbjct 338662 TTATACCATTCCCAAATATCATGATGTTTGATAGGAAAAATAACGAAACGATTTTTATTT 338603 Query 50421 ttttCTAATATCGGTTCT 50438 | || ||| || |||||| Sbjct 338602 TCTTGTAAGATTGGTTCT 338585 >seq444 Length=38654 Score = 91.5 bits (100), Expect = 3e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| || | |||||| | || || || | ||| | ||| || ||| || || ||||| Sbjct 5728 ACCTCCACGAAGACGGAGAACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGA 5669 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || || |||| || | ||| |||||||||||||| | | ||||| |||||||| Sbjct 5668 AAGGGTACGACCATCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCAGGTGG 5609 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || || || || ||||| || || | || ||||| || | || || || || Sbjct 5608 GATACCCTCCTTGTCTTGAATCTTGGTCTTGACATTCTCAATGGTGTCAGAACCCTCGAC 5549 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| ||||| |||||||| || || || | || || ||||| Sbjct 5548 CTCGAGAGTGATGGTCTTACCAGTCAAGGTCTTGACGAAGATTTGCAT 5501 >seq1158 Length=25781 Score = 87.8 bits (96), Expect = 4e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | |||||| | || | ||| | ||| | ||| || ||| || || || || Sbjct 9024 ACCACCACGAAGACGGAGGACGAGATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGA 9083 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || || | || || | ||| |||||||||||||| | | |||||||| ||||| Sbjct 9084 AAGGGTACGACCGTCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGATCGGGTGG 9143 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || || || || ||||| || || | || || || || | ||| || || || Sbjct 9144 GATACCCTCCTTGTCTTGAATCTTGGTCTTGACGTTCTCGATGGTATCAGAACCCTCAAC 9203 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||| |||||||| || || || | ||| || ||||| Sbjct 9204 CTCAAGGGTGATGGTCTTACCAGTCAAGGTCTTGACAAAGATTTGCAT 9251 Score = 87.8 bits (96), Expect = 4e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | || || || | ||| | ||| || ||| || || || Sbjct 9706 ATACCACCACGGAGACGGAGAACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCG 9765 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| || | ||| |||||||||||||| | | ||||| |||||| Sbjct 9766 GAAAGGGTGCGACCATCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCAGGT 9825 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || |||||||| || || | || || || || | ||| || || Sbjct 9826 GGGATACCCTCCTTATCTTGGATCTTGGTCTTGACGTTCTCGATGGTATCGGAACCCTCA 9885 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || | || ||||| || ||||| | ||| || | ||| || ||||| || Sbjct 9886 ACCTCCAAGGTGATGGTCTTGCCAGTCAGTGTCTTTACAAAGATTTGCATGTT 9938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984311204135700