Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq232 120 5e-22 >seq232 Length=384298 Score = 120 bits (132), Expect = 5e-22 Identities = 369/567 (65%), Gaps = 14/567 (2%) Strand=Plus/Minus Query 38811 TCACTATTCATCACATTGTATTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTT 38870 ||| | ||||||||| | ||||| || || | ||| |||||| || || || ||| Sbjct 339511 TCATTGTTCATCACACCTGACTTTTGATACTCTGCAACACGTTTTTCAAAGAAATTAGTT 339452 Query 38871 TTTCCTTCTAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTT 38930 ||||| | | ||| || | || ||| ||||| ||||||||| | ||| Sbjct 339451 TTTCCCTGAAGTGAAATCATATCCATGAAATCGAATGGATTTGCTGATCCGTAAACACGC 339392 Query 38931 TCTCCTATCAATACATATAATAATCTATCGGCCACAAATTCAACATATTGTAACATTAAT 38990 || | |||| | ||||||||||||||| || || || | ||| ||| ||| | Sbjct 339391 TCACAGCCCAATTCTACTAATAATCTATCGGCAACGAACTCTAAATACTGTGTCATAAGA 339332 Query 38991 TCACAATTCATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatt 39050 || |||||||| | ||| | | || | | || ||||||| | |||| || Sbjct 339331 CCAGCGTTCATACCAATTAAACTTACCGGAAGAGATTCTGTGATAAATTGTCTTTCGATA 339272 Query 39051 tctacagcttgtttaattatcataattatattattttttgataatttatatttaatatg- 39109 |||| ||| | ||| || | || ||| ||||| | ||| | | | ||| Sbjct 339271 TCTAAAGCATCGACAATAATTTCTTTAATTCTATCTTTTGGCACTTTGTTTACCAAATGG 339212 Query 39110 --attc-gcatataGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAA 39166 ||| ||| || ||| |||||||| ||||| ||||||||| | ||| || || Sbjct 339211 TGATTGTGCAG---GTGAACC-GCAAAATCACAATGTACACCTTCGTCACGAGAAATCAA 339156 Query 39167 TTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGC 39226 ||||||| || ||||| ||||||||||| || | ||||| | |||| | ||||| Sbjct 339155 TTCATTAGAGAATGTTAAACCTGGCATTAAACCACGTTTTTTCAACCAATAAATTGAACA 339096 Query 39227 AAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAA 39286 ||| | || || || || || || || ||||| || |||| |||| | || Sbjct 339095 GAAAGCTCCCGAGAAAAAGATTCCTTCAACTGCAGCAAAAGCAATTAGTCTTTCAGCA-- 339038 Query 39287 CATTAATTTATCATCTAAAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGG 39346 ||| |||| | ||||| |||| ||||| ||||||||||| || || | ||| Sbjct 339037 ----AATGAATCAGATTCGATCCATTTTAAAGCCCATTCTGCTTTTTTCTTAATTGCAGG 338982 Query 39347 TATATTTTCTATAGCTTTAAATAATTC 39373 | | ||||| ||| ||||| || || Sbjct 338981 AAAAACTTCTAAAGCATTAAACAACTC 338955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904984593375600