Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_021298.1 Length=51252 Score E Sequences producing significant alignments: (Bits) Value seq5514 365 1e-96 seq10553 190 7e-44 seq2755 152 2e-32 seq3745 93.3 1e-14 seq892 93.3 1e-14 >seq5514 Length=778 Score = 365 bits (404), Expect = 1e-96 Identities = 528/752 (70%), Gaps = 46/752 (6%) Strand=Plus/Plus Query 39636 ACCTGCTCCTGGTAGATGATGAGCTGGAAGGTCGGGTCCAGGATCTCCGACAGGGACTCG 39695 |||||||||||||||||||||||| | ||| | ||||||||||| | || | | | Sbjct 24 ACCTGCTCCTGGTAGATGATGAGCCCGTAGGACTCCTCCAGGATCTCGGCGAGCGGCGCC 83 Query 39696 GCCACCTCGGGGTGGATCGGCGTGATCGCCTGCTGCCCGTTCTTACGGAGGGCGTAGTTC 39755 ||| |||||||||||||||||||||| ||||| ||||||||| || || || |||||| Sbjct 84 TCCAGCTCGGGGTGGATCGGCGTGATCTCCTGCACCCCGTTCTTGCGCAGCGCATAGTTC 143 Query 39756 GTGTGAGACCCCACGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCCGAGATGTCC 39815 ||||| || | ||||| |||||||| || ||||| |||| || |||||||||||| Sbjct 144 GTGTGCGAGTTGGCTCCCATGGGACCCGGCCGATACAGGGCGATGAGGGCCGAGATGTCA 203 Query 39816 TCGAAGTTGTCCGGCTTCAGCAGACGGAGCAGTGAGCGCATC------------------ 39857 |||||||||| ||||||| |||||| | || Sbjct 204 CCGAAGTTGTCGGGCTTCATCAGACGCATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNN 263 Query 39858 ------------------GCGCCG--CCGTCGAGCTGGAAGACCGAGAGCGTGTCGCCCC 39897 ||| || | ||||||||||||||| || |||||||| | Sbjct 264 NNNNNNNNNNNNNNNNAAGCGGCGGGCTGTCGAGCTGGAAGACGCCCAGGGTGTCGCCGC 323 Query 39898 TGGCCAGCAGCTCGTACGTCGCGGGGTCGTCCAG--GGGGATGTTCTCCAGGTCGACGTG 39955 || ||||||| |||| |||||||||| || | ||||| || ||||||| | Sbjct 324 GCGCGAGCAGCTGGTACACGCCGGGGTCGTCGAGACCGAGATGT--TCGAGGTCGAGCTC 381 Query 39956 CTCCCCACGGTTGAGGCGGATGTTCTCGACCGCGTCGCCCATGATCGTGAGGTTCCGGAG 40015 || |||||||| ||||||||| |||| ||| || |||||||||||||||||||| Sbjct 382 TTCGCCACGGTTCGTGCGGATGTTGTCGAGCGCATCCGAGATGATCGTGAGGTTCCGGAG 441 Query 40016 CCCGAGGAAGTCCATCTTCAGCAGGCCCAGAGCCTCGCAGCTCGGGTAGTCGAACTGCGT 40075 ||| |||||||||||||| | ||| || || | |||||| |||||||||||||||||| Sbjct 442 CCCCAGGAAGTCCATCTTGATCAGACCGAGGGACTCGCACGACGGGTAGTCGAACTGCGT 501 Query 40076 GATCGTCGCGCCGTCCTGCGGTCGC-ACCCA-CACCGGGATGTGGTCGACCAGAGGCTCG 40133 || || ||| ||||| |||| | || | ||| ||| ||||| || || ||| Sbjct 502 GACGATCTGCCCGGCCTGC--TCGCGGCGCATGATCGGAATGATGTCGAGGAGCGGATCG 559 Query 40134 TCGGACATGATCACACCGGCTGCGTGCACACCCATCTGCCGGACGAGACCTTCGAGACCG 40193 ||||||||||| ||||| |||||||| ||| ||| || || ||||||||||| Sbjct 560 GACGACATGATCACGCCGGCGGCGTGCACGCCCCACTGGCGCTTCAGCCCTTCGAGACCC 619 Query 40194 AGCGCGGTGTCGATGACCTCCTTGGCGTCCGGGTCGGAGCCGTAGATGCCCCGGATCTCG 40253 |||||| ||||| |||| ||| || || || || | || | | || || |||| Sbjct 620 AGCGCGCGGTCGAAGACCGTCTTCGCCTCGGGATCCGTCTCGATCAGGGTCCTGAACTCG 679 Query 40254 GCGGCCTCCTCGTACCGAGGGTGCTCGGCGTTGAAGATCCCGTCGAGGGGCATCGAGTTG 40313 || |||| ||||| ||||| | | || ||| || |||||||||||||| ||| Sbjct 680 CTCGCTTCCTTGTACCTCGGGTGAGCAGAGTCGAACATGCCGTCGAGGGGCATGTCCTTG 739 Query 40314 CCCATCACGTCGGCCGGGTACGCCTTGGTCAG 40345 ||||||||| | ||| ||||||||| || Sbjct 740 CCCATCACGGGCGGCGGCATCGCCTTGGTGAG 771 >seq10553 Length=379 Score = 190 bits (210), Expect = 7e-44 Identities = 273/383 (71%), Gaps = 9/383 (2%) Strand=Plus/Plus Query 39201 AGCCCGAAGCGGATCTCGTGCTCCCCGTTGGGGGTGAACGAGCTGTTCGAGACCGACACG 39260 || ||||||||||| |||| | ||| || | ||| || || ||||| | || || Sbjct 1 AGGCCGAAGCGGATGTCGT---CGCCGACGGCCGCGAAGAAGTTGATCGAGTCGGAGACA 57 Query 39261 TCGGGCGGCAGGACCCGAAGGCCCATGCGCCGAGACTCGCCGAGGTACGTGGCCATCTTG 39320 |||||||| |||||| | ||||||||| || |||| ||||| ||||||||| Sbjct 58 TCGGGCGGAAGGACCTTGATGCCCATGCGGCGGCACTCATTCAGGTAAAGCGCCATCTTG 117 Query 39321 TTCTTGTCGTCGCCCACCGAGGTGAGCGCAGCCGCCATGTACTCGGCTGGGTAGTGCGTC 39380 | |||| |||||| || ||||||| ||||||||||||||||| |||||||||| | Sbjct 118 TCCTTGGAGTCGCCGACGCTGGTGAGCAGCGCCGCCATGTACTCGGCGGGGTAGTGCGCC 177 Query 39381 TTCAGCCACGCCGTGCGGTACGCGATGAGTCCGTACGCCGCCGAGTGCGCCTTGTTGAAG 39440 || || | || || | |||| || ||| ||||| || || ||||| || ||||||||| Sbjct 178 TTGAGGTATGCGGTCCAATACGAGACGAGACCGTATGCGGCGGAGTGGGCTTTGTTGAAG 237 Query 39441 GCGTAGCCAGCGAACGGGACCAGCACGTCCCACACTGCCTGGATGGCACCGTCCGAGTAG 39500 |||||| | | ||| || | ||| | |||||||| |||| |||||| | || | | Sbjct 238 GCGTAGTCCGAGAAGGGCAGCAGGATGTCCCACAGCGCCTTGATGGCCGCCTCGCCGAAT 297 Query 39501 CCTCGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGG---GC 39557 || |||||| | || | |||| || ||| |||| | || ||||| | Sbjct 298 CCGCGCTCGGTCATACCGCCCGCGAAGCCTTCGTACTGCTTGTCGAG---CTCGGACTTC 354 Query 39558 TTCTTCTTGCCCATCGCCCGGCG 39580 ||||||||||||||||| || || Sbjct 355 TTCTTCTTGCCCATCGCTCGACG 377 >seq2755 Length=1107 Score = 152 bits (168), Expect = 2e-32 Identities = 465/707 (66%), Gaps = 20/707 (3%) Strand=Plus/Minus Query 40967 CATCTCGGCGGCCGACTTCAGGTAGTACCCGGAGCCCTCGAAGCGGAAGCGGTGAGGGTT 41026 ||||||||| || | ||| | |||||||||| ||| ||||| ||| |||| |||| Sbjct 887 CATCTCGGCCGCGGTCTTGATGTAGTACCCGTCGCCGTCGAACTTGAACCGGTTCGGGTC 828 Query 41027 ATCGAGCGTGGTGCCGGTCTGGACGCACAGCAGTGCATCGTGAGCGACCGACTCCTCGGC 41086 || | ||| | || | ||| |||||||| || || ||||| ||| | | ||| | | Sbjct 827 GTCCATCGTCGATCCCGACTGCACGCACAGGAGCGCCTCGTGCGCGTCGGCCTCGT-GCT 769 Query 41087 GGTGAC-GTAGTGGGAATCGTTCGTGACCACCGGAGTGAGCGCGAGGTGCTTCCCGAGCC 41145 | || |||||| || ||||| ||| | ||| | | || |||| |||| ||| | Sbjct 768 GATGCGTGTAGTGCGAGTCGTTGGTGGCGACCAGCGGGATGTTCAGGTCCTTCGAGAGAC 709 Query 41146 GGTACAGATCCTCGCGGACCCGGCGCTCGATCTCGATGCCGTGGTCCATGAGTTCGAGCA 41205 || ||||| || || ||||||||| | ||||||||||||| ||| | Sbjct 708 GGAGGAGATCGGTCATCACGCGCCGCTCGATCGACAGACCGTGGTCCATGATCTCGGCGA 649 Query 41206 GGTAGCGCTCGCGACCCAGGATCTCCAGCCAGTCGCCAGCGGCCCTGACTGCCTCGTCGT 41265 |||| ||| || | | ||| | | ||| | |||||| | || |||||| Sbjct 648 AGTAGTTCTCCTTGCCGAACAGGTCCTGGAACTCGGCTGCGGCCGCGCGCGCAGCGTCGT 589 Query 41266 ACTGACCCAGGTTCAGCCTGGTCATGACTTCGCCACCAGGGCACCCCGTGGTTCCGATGA 41325 |||| || || ||| | ||| || ||||| ||||| || ||||| |||| | Sbjct 588 ACTGTCCGAGACGCAGGCGCGTCTGGATCTCGCCTGACGGGCATCCGGTGGTCGCGATCA 529 Query 41326 TGCCCTCGCTGCAC-TCGGCGACGAGTTCCTTGTCGAGGCGGGCGTACTTGCCC-ATCAG 41383 || | | | || || | || || ||| | ||| | |||| | || Sbjct 528 GTCCTTTGGAATAGGTCTGCAGC-AGCTCGCGGTCCATGCGCGG---CTTGAAGTAGTAG 473 Query 41384 CCCCTCCTGGTAGGAGCGAGACGTGATGCGCATGAGGTTGTGAAGGCCCGTCTTGTTCTG 41443 ||| | || | | | || || ||| || | |||||||| | |||| || |||| Sbjct 472 CCCTCCATGCTCG-ACCGGGAGCTGAGCCGGAACAGGTTGTGCATGCCCTCGGTGCTCTG 414 Query 41444 -CGCGAGCATGGTCATGTGCGTGTACGCACCGTTACCCGACACGTCGTAACGCTTCTGCT 41502 | | | |||||||||||| |||||||||||| |||||| ||||||| | |||||| | Sbjct 413 ACTCCA-CATGGTCATGTGGGTGTACGCACCGGAACCCGAGACGTCGTCGCTCTTCTGAT 355 Query 41503 CGGGCGACCCCCACTTGACCCG------GTCAAGGCTTCGCCTGTCGCCGGGGGCGACGT 41556 ||||||| ||||||| || || |||| || || | |||||| | ||| | Sbjct 354 CGGGCGAGCCCCACTGCACGCGCGTCTTGTCACTGCGGTGCGT---GCCGGGAGTGACAT 298 Query 41557 AGGCTTCCATTCCCACGATGGGCTTGATGCCCGCTGCGGTGGCCTGCTTGAACAGCTCGT 41616 |||| || | || | ||| ||||||| ||||| || ||||| |||| | | |||| Sbjct 297 AGGCCTCGAGCCCGATGATCGGCTTGACACCCGCGGCATTGGCCGCCTTGTAGAACTCGA 238 Query 41617 AGGCACCATGCATGTGGCCGTGGTCGGTCACTGCGATGGCTCGCATC 41663 | || | ||| |||||| |||||||| |||||||| ||||| Sbjct 237 AAGCCGCGAAAGTGTTGCCGTGATCGGTCACCGCGATGGCCGGCATC 191 >seq3745 Length=368 Score = 93.3 bits (102), Expect = 1e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 39512 CGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCAT 39571 ||| |||| ||||| || || | |||||||| | | ||| |||||||||||| Sbjct 365 CGCGCCCTCGCGGAAGATCTCGCGGTGCTTGGCCATTTCGGCCGGCACCTTCTTGCCCAT 306 Query 39572 CGCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGACCTGCGCAACCTT 39631 ||| ||||| ||||||||||| ||||| | ||| ||| ||| || |||||| | || Sbjct 305 CGCGCGGCGCAGCAGGTCGGCGCCGCCGAGCGAGTAACCGCCCACGATCTGCGCCATCTG 246 Query 39632 CTGCACCTGCTCCTGGTAGATGATGA 39657 | ||||||||||||||| | |||| Sbjct 245 CATCACCTGCTCCTGGTACACCATGA 220 >seq892 Length=133947 Score = 93.3 bits (102), Expect = 1e-14 Identities = 189/279 (68%), Gaps = 24/279 (9%) Strand=Plus/Minus Query 39559 TCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGA 39618 ||||||| ||||| || ||||| ||||| ||||| | || || || || |||| ||| Sbjct 125711 TCTTCTTACCCATGGCACGGCGCAGCAGATCGGCTTCGCCCAGCGTATAGCCGGACATTT 125652 Query 39619 CCTGCGCAACCTTCTGCACCTGCTCCTGGTAGATGATGAGCTGGAAGGTCGGGTCCAGGA 39678 ||||||| | || | |||||| |||||||||||||||| | || || Sbjct 125651 CCTGCGCGATCTGCATCACCTGTTCCTGGTAGATGATGA------------CGCCCTGGG 125604 Query 39679 TCTCC--GACAGGGACTCGGCCACCTCGGGGTGGATCGGCGTGATCGCCTGCTGCCCGTT 39736 | ||| ||| | || | | | | || ||| ||||||| || ||| ||| | || || Sbjct 125603 TTTCCTTGAC-GAGA-TGGTCGATCTTGGGATGGATCGACGCCATCTCCTCGTCGCCATT 125546 Query 39737 CTTACGGAGGGCGTAGTTCGTG-TGAGACCCCACGCCCATCGGACCCGGACGGTACAGCG 39795 ||| || | |||| ||| | || |||||||||||||||||||||||| Sbjct 125545 CTTGCGCGCGTTGTAGGTCGGGATG-------TTTTCCATCGGACCCGGACGGTACAGCG 125493 Query 39796 CGACGACGGCCGAGATGTCCTCGAAGTTGTCCGGCTTCA 39834 | || | || ||||||||||| ||| ||||||| Sbjct 125492 CCACAAGCGCGATGATGTCCTCGATCCGGTCGGGCTTCA 125454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163858756861576