Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_021304.1 Length=51552 Score E Sequences producing significant alignments: (Bits) Value seq5514 358 2e-94 seq10553 190 7e-44 seq2755 190 7e-44 seq3745 84.2 7e-12 >seq5514 Length=778 Score = 358 bits (396), Expect = 2e-94 Identities = 523/750 (70%), Gaps = 42/750 (6%) Strand=Plus/Plus Query 39924 ACTTGCTCCTGGTAGATGATGAGCTGGAAGGTCGGGTCCAGGATCTCCGACAGGGACTCG 39983 || ||||||||||||||||||||| | ||| | ||||||||||| | || | | | Sbjct 24 ACCTGCTCCTGGTAGATGATGAGCCCGTAGGACTCCTCCAGGATCTCGGCGAGCGGCGCC 83 Query 39984 GCCACCTCGGGGTGGATCGGCGTGATCGCCTGCTGCCCGTTCTTCCGGAGGGCGTAGTTC 40043 ||| |||||||||||||||||||||| ||||| ||||||||| || || || |||||| Sbjct 84 TCCAGCTCGGGGTGGATCGGCGTGATCTCCTGCACCCCGTTCTTGCGCAGCGCATAGTTC 143 Query 40044 GTGTGAGACCCCACGCCCATCGGACCAGGACGGTACAGCGCGACGACGGCCGAGATGTCC 40103 ||||| || | ||||| ||||| || || ||||| |||| || |||||||||||| Sbjct 144 GTGTGCGAGTTGGCTCCCATGGGACCCGGCCGATACAGGGCGATGAGGGCCGAGATGTCA 203 Query 40104 TCGAAGTTGTCCGGCTTCAGCAGACGGAGCAGTGAGCGCATC------------------ 40145 |||||||||| ||||||| |||||| | || Sbjct 204 CCGAAGTTGTCGGGCTTCATCAGACGCATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNN 263 Query 40146 ------------------GCGCCG--CCGTCGAGCTGGAAGACCGAGAGCGTGTCGCCCC 40185 ||| || | ||||||||||||||| || |||||||| | Sbjct 264 NNNNNNNNNNNNNNNNAAGCGGCGGGCTGTCGAGCTGGAAGACGCCCAGGGTGTCGCCGC 323 Query 40186 TGGCCAGCAGCTCGTACGTCGCGGGGTCGTCCAG--GGGGATGTTCTCCAGGTCGACGTG 40243 || ||||||| |||| |||||||||| || | ||||| || ||||||| | Sbjct 324 GCGCGAGCAGCTGGTACACGCCGGGGTCGTCGAGACCGAGATGT--TCGAGGTCGAGCTC 381 Query 40244 CTCCCCACGGTTGAGGCGGATGTTCTCGACCGCGTCGCCCATGATCGTGAGGTTCCGGAG 40303 || |||||||| ||||||||| |||| ||| || |||||||||||||||||||| Sbjct 382 TTCGCCACGGTTCGTGCGGATGTTGTCGAGCGCATCCGAGATGATCGTGAGGTTCCGGAG 441 Query 40304 CCCGAGGAAGTCCATCTTCAGCAGGCCCAGAGCCTCGCAGCTCGGGTAGTCGAACTGCGT 40363 ||| |||||||||||||| | ||| || || | |||||| |||||||||||||||||| Sbjct 442 CCCCAGGAAGTCCATCTTGATCAGACCGAGGGACTCGCACGACGGGTAGTCGAACTGCGT 501 Query 40364 GATCGTCGCGCCGTCCTGCGGCCGAACCCACACCGGGATGTGGTCGACCAGCGGCTCGTC 40423 || || ||| ||||| || | | ||| ||| ||||| ||||| ||| Sbjct 502 GACGATCTGCCCGGCCTGCTCGCGGCGCATGATCGGAATGATGTCGAGGAGCGGATCGGA 561 Query 40424 GGACATGATCACACCGGCTGCGTGCACACCCATCTGCCGGACGAGACCTTCGAGACCGAG 40483 ||||||||||| ||||| |||||||| ||| ||| || || ||||||||||| || Sbjct 562 CGACATGATCACGCCGGCGGCGTGCACGCCCCACTGGCGCTTCAGCCCTTCGAGACCCAG 621 Query 40484 CGCGGTGTCGATGACCTCCTTGGCGTCCGGGTCGGAGCCGTAGATGCCCCGGATCTCGGC 40543 |||| ||||| |||| ||| || || || || | || | | || || |||| Sbjct 622 CGCGCGGTCGAAGACCGTCTTCGCCTCGGGATCCGTCTCGATCAGGGTCCTGAACTCGCT 681 Query 40544 GGCCTCCTCGTACCGAGGGTGCTCGGCGTTGAAGATCCCGTCGAGGGGCATCGAGTTGCC 40603 || |||| ||||| ||||| | | || ||| || |||||||||||||| ||||| Sbjct 682 CGCTTCCTTGTACCTCGGGTGAGCAGAGTCGAACATGCCGTCGAGGGGCATGTCCTTGCC 741 Query 40604 CATCACGTCGGCCGGGTACGCCTTGGTCAG 40633 ||||||| | ||| ||||||||| || Sbjct 742 CATCACGGGCGGCGGCATCGCCTTGGTGAG 771 >seq10553 Length=379 Score = 190 bits (210), Expect = 7e-44 Identities = 273/383 (71%), Gaps = 9/383 (2%) Strand=Plus/Plus Query 39489 AGCCCGAAGCGGATCTCGTGCTCCCCGTTGGGGGTGAACGAGCTGTTCGAGACCGACACG 39548 || ||||||||||| |||| | ||| || | ||| || || ||||| | || || Sbjct 1 AGGCCGAAGCGGATGTCGT---CGCCGACGGCCGCGAAGAAGTTGATCGAGTCGGAGACA 57 Query 39549 TCGGGCGGCAGGACCCGCAGGCCCATGCGCCGAGACTCGCCGAGGTACGTGGCCATCTTG 39608 |||||||| |||||| | ||||||||| || |||| ||||| ||||||||| Sbjct 58 TCGGGCGGAAGGACCTTGATGCCCATGCGGCGGCACTCATTCAGGTAAAGCGCCATCTTG 117 Query 39609 TTCTTGTCGTCGCCCACCGAGGTGAGCGCAGCCGCCATGTACTCGGCTGGGTAGTGCGTC 39668 | |||| |||||| || ||||||| ||||||||||||||||| |||||||||| | Sbjct 118 TCCTTGGAGTCGCCGACGCTGGTGAGCAGCGCCGCCATGTACTCGGCGGGGTAGTGCGCC 177 Query 39669 TTCAGCCACGCCGTGCGGTACGCGATGAGTCCGTACGCCGCCGAGTGCGCCTTGTTGAAG 39728 || || | || || | |||| || ||| ||||| || || ||||| || ||||||||| Sbjct 178 TTGAGGTATGCGGTCCAATACGAGACGAGACCGTATGCGGCGGAGTGGGCTTTGTTGAAG 237 Query 39729 GCGTAGCCAGCGAACGGGACCAGCACGTCCCACACTGCCTGGATGGCACCGTCCGAGTAG 39788 |||||| | | ||| || | ||| | |||||||| |||| |||||| | || | | Sbjct 238 GCGTAGTCCGAGAAGGGCAGCAGGATGTCCCACAGCGCCTTGATGGCCGCCTCGCCGAAT 297 Query 39789 CCTCGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGG---GC 39845 || |||||| | || | |||| || ||| |||| | || ||||| | Sbjct 298 CCGCGCTCGGTCATACCGCCCGCGAAGCCTTCGTACTGCTTGTCGAG---CTCGGACTTC 354 Query 39846 TTCTTCTTGCCCATCGCCCGGCG 39868 ||||||||||||||||| || || Sbjct 355 TTCTTCTTGCCCATCGCTCGACG 377 >seq2755 Length=1107 Score = 190 bits (210), Expect = 7e-44 Identities = 534/801 (67%), Gaps = 28/801 (3%) Strand=Plus/Minus Query 41255 CATCTCGGCGGCCGACTTCAGGTAGTACCCGGAGCCCTCGAAGCGGAAGCGGTGAGGGTT 41314 ||||||||| || | ||| | |||||||||| ||| ||||| ||| |||| |||| Sbjct 887 CATCTCGGCCGCGGTCTTGATGTAGTACCCGTCGCCGTCGAACTTGAACCGGTTCGGGTC 828 Query 41315 ATCGAGCGTGGTGCCGGTCTGGACGCACAGCAGTGCATCGTGAGCGACCGACTCCTCGGC 41374 || | ||| | || | ||| |||||||| || || ||||| ||| | | ||| | | Sbjct 827 GTCCATCGTCGATCCCGACTGCACGCACAGGAGCGCCTCGTGCGCGTCGGCCTCGT-GCT 769 Query 41375 GGTGAC-GTAGTGGGAATCGTTCGTGACCACCGGAGTGAGCGCGAGGTGCTTCCCGAGCC 41433 | || |||||| || ||||| ||| | ||| | | || |||| |||| ||| | Sbjct 768 GATGCGTGTAGTGCGAGTCGTTGGTGGCGACCAGCGGGATGTTCAGGTCCTTCGAGAGAC 709 Query 41434 GGTACAGATCCTCGCGGACCCGGCGCTCGATCTCGATGCCGTGGTCCATCAGCTCCAGGA 41493 || ||||| || || ||||||||| | ||||||||||| | ||| || Sbjct 708 GGAGGAGATCGGTCATCACGCGCCGCTCGATCGACAGACCGTGGTCCATGATCTCGGCGA 649 Query 41494 AGTACCGGTCACGCCCGAAGACCTCCAGGTAC-CGAC--CGGCCTCCTTCACGGCCTCGT 41550 |||| || ||||| | ||| || || || | ||||| | | | || || Sbjct 648 AGTAGTTCTCCTTGCCGAACAGGTCCTGGAACTCGGCTGCGGCCGCGCGCGCAGC---GT 592 Query 41551 CGTACTGCCCGAGGTTCAGCCGGGTCATGATCGCACCGCCAGGACATCCGGTCGTGACGA 41610 ||||||| ||||| ||| || ||| |||| | || || |||||||| || ||| Sbjct 591 CGTACTGTCCGAGACGCAGGCGCGTCTGGATCTCGCCTGACGGGCATCCGGTGGTCGCGA 532 Query 41611 CCAGGCCCTCGTTGT-GCTCGGCGACCAGGTCGAAGTCCATGCGCGGGTACTTCCCG-AG 41668 ||| || | | | | || || | ||| ||| |||||||||||| ||| | || Sbjct 531 TCAGTCCTTTGGAATAGGTCTGC-AGCAGCTCGCGGTCCATGCGCGG---CTTGAAGTAG 476 Query 41669 CAGGCCCTCCTGGTACGACCGCGAGCTGAGCTTCATGAGGTTGTGCAGGCC---GGTCTT 41725 || |||||| | |||||| ||||||||| | |||||||||| ||| ||| | Sbjct 475 TAG-CCCTCCATGCTCGACCGGGAGCTGAGCCGGAACAGGTTGTGCATGCCCTCGGTGCT 417 Query 41726 GTTCGTGGAGAGGATCGTGAGGTGCGTGTACGCACCCCGACCGCTCACGTCGTACCGCTT 41785 | | | | | || || || ||||||||||| ||| ||||||| | ||| Sbjct 416 CTGACTCCACATGGTCATGTGG---GTGTACGCACCGGAACCCGAGACGTCGTCGCTCTT 360 Query 41786 CTGGTCTTCCGTGCCCCACTGGACTCGCTCCTGGTCGAAGCGG-GAGT-CCGGG-GCCAT 41842 ||| || || ||||||||| || ||| || ||| |||| | || ||||| | | Sbjct 359 CTGATCGGGCGAGCCCCACTGCACGCGCGTCTTGTCACTGCGGTGCGTGCCGGGAGTGAC 300 Query 41843 GTACGCCTCGATGCCGATGATCGGCTTGACCCCAGCGGCCTGCGCCGAGGTGAAGAAGTC 41902 || ||||||| ||||||||||||||||| || ||||| | |||| || |||| || Sbjct 299 ATAGGCCTCGAGCCCGATGATCGGCTTGACACCCGCGGCATTGGCCGCCTTGTAGAACTC 240 Query 41903 GTACGCACCGTGAAGGTTGCCGTGGTCCGTCACTGCGACGGCAGGAGCACCCTG--GCGG 41960 | | || || | ||||||||| || ||||| |||| ||| | ||| | || | | Sbjct 239 GAAAGCCGCGAAAGTGTTGCCGTGATCGGTCACCGCGATGGCCG--GCATCTTGTAGTCG 182 Query 41961 GCGACCTCGGCGACCATCTGCTTCATCCGAGCGGCCCCGTCGAGGAGGCTGTACTCGGAG 42020 ||| || | | |||| || ||| || || |||||||| | ||||||| | Sbjct 181 GCGGCCGCCTGGGTCATCGCGTTGATCTTCGCCGCTCCGTCGAGCATCGAGTACTCGCTG 122 Query 42021 TGGTTGTGCAGGTGGACGAAG 42041 || |||||||||||||||| Sbjct 121 TGCACGTGCAGGTGGACGAAG 101 >seq3745 Length=368 Score = 84.2 bits (92), Expect = 7e-12 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 39800 CGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCAT 39859 ||| |||| ||||| || || | |||||||| | | ||| |||||||||||| Sbjct 365 CGCGCCCTCGCGGAAGATCTCGCGGTGCTTGGCCATTTCGGCCGGCACCTTCTTGCCCAT 306 Query 39860 CGCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGACCTGTGCAACCTT 39919 ||| ||||| ||||||||||| ||||| | ||| ||| ||| || ||| || | || Sbjct 305 CGCGCGGCGCAGCAGGTCGGCGCCGCCGAGCGAGTAACCGCCCACGATCTGCGCCATCTG 246 Query 39920 CTGCACTTGCTCCTGGTAGATGATGA 39945 | ||| ||||||||||| | |||| Sbjct 245 CATCACCTGCTCCTGGTACACCATGA 220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164818604306776