Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq232 178 4e-39 seq1205 152 2e-31 seq457 152 2e-31 seq53 150 5e-31 seq2491 145 2e-29 >seq232 Length=384298 Score = 178 bits (196), Expect = 4e-39 Identities = 566/868 (65%), Gaps = 25/868 (3%) Strand=Plus/Minus Query 155649 CACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCA 155708 |||| ||||||| || || ||||||||||| ||||| ||||||| ||| ||| Sbjct 341099 CACAAGTTAGAAGAACGAATAGTTCCTAAATTCTTATGGTTCGATTTACGGTTTGCTGCA 341040 Query 155709 TCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAG 155768 || ||||| | || ||||| ||||| || || || || | || || || || ||| Sbjct 341039 TCTTTGTACAACATATATGGTGTTCCGGTTTCGATTTGAGATTCAAGGATTTTCTCCCAT 340980 Query 155769 AGGTCACGGGCA----TTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATA 155824 | ||||| ||| || ||| ||| | ||| | | | || || | |||| Sbjct 340979 AATTCACGAGCACGGATTGTTTTTCTTCCTTTATTT----TGAAATTCGTAATCTGTATA 340924 Query 155825 CAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAA 155884 | || | | || ||||| ||| |||| | ||| || || | || || || | Sbjct 340923 TAATTTTTCGAATTCTTCACCATAAACATCATATAATCCCGGACATTCATTTGGACACAT 340864 Query 155885 CAGCGACCAAATTTTAT--TACCGATTACACGCTCCATAAATACATCACTCGCCCAAATA 155942 | | |||| || || | | || ||||| | ||| || | ||| | ||| || Sbjct 340863 TAAAGTCCAAGTTGAATCTTCCTGA--ACACGTTTCATGAACAAATCTGAAGTCCACATG 340806 Query 155943 GCATAGAAAAGGTCCCTTGC---CTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCT 155999 || |||| | || ||||| | || || || || | || ||| ||| || || Sbjct 340805 GCGAAGAATAAATCTCTTGCACGCATTT-CTTCTTTTC-CTGT-ATTTTTCTTTAAATCC 340749 Query 156000 AAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTC 156059 ||||| || |||||||| ||| | || | || || ||||||||||| || | Sbjct 340748 AAGAAATCAAAAATATCAGCATGCCAGGTTTCGATGTAAATTGCAAAACTACCTTTACGT 340689 Query 156060 TT---GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATA 156116 || ||| || |||||||| || || || || | ||||| || | | ||| |||| | Sbjct 340688 TTTCCGCCGCCTTGATCTACGTAACGCGCTGTATCGTTGAAAACTCTCAACATCGGAACA 340629 Query 156117 ATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGA 156176 || || || ||||| || || || |||||||| | || |||| | || || |||||| Sbjct 340628 ATTCCGTTTGAAGTTCCGTTTGTACCGCGAATGTAAGATCCAGTCGCACGTACGTTATGA 340569 Query 156177 ATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTG 156236 ||| |||||||| || || | | | || |||| ||| || |||| |||| Sbjct 340568 ATAGAAAGTCCAATTCCTCCAGCTGACTGCGAGATTTTTGCGGTTTGTTTTAAGGTATCA 340509 Query 156237 AAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGT 156296 ||||||| |||||| |||||| | ||||| |||| | || ||| | ||| ||| Sbjct 340508 TAAATACCATCAATACTATCATCCTGCATTGCAAGTAAGAAACAAGAAGACATTTGCGGT 340449 Query 156297 CGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATA 156356 ||| ||||| || || || | || || |||||||| |||| |||| |||||||| Sbjct 340448 TTTGGAGTTCCTGCATTAAACAACGTTGGCGTTGCATGCGTAAAGAACTTTTTAGACATT 340389 Query 156357 TAATCGTATGTCTCCTTAATC--TTCTCAAGATTAGACCCGTGAATACAGATAGAGACCC 156414 | ||||| || || | | | || | || | | |||||||| | ||| || | Sbjct 340388 AAGTCGTAAGTTTCAATTACCGATTTTAAATCGTCTA--AGTGAATACCAACAGAAACAC 340331 Query 156415 TCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGC 156474 ||| |||| ||||| ||||||||||| || ||| | ||| ||||| || | | Sbjct 340330 GCATTAACATGTGCTGTGGACGCTCTACGATTTTTCCGTTTATTTTAAGAAGATAAGAAC 340271 Query 156475 GTTCCAGAGTTTTAAACCCGAAATAATC 156502 | || | ||||| || || |||||||| Sbjct 340270 GCTCTAAGGTTTTGAAACCAAAATAATC 340243 >seq1205 Length=9198 Score = 152 bits (168), Expect = 2e-31 Identities = 222/309 (72%), Gaps = 6/309 (2%) Strand=Plus/Minus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 || ||||| ||||| | |||||| || || |||||||| ||||| || || ||| Sbjct 2287 TCCTCCATGGCCTTGACAAGACGACGTTGGATGTAACCAGTCTCGGATGTCTTGACGGCT 2228 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAG- 302690 ||||| || ||||| ||||||||||||| ||||||||||| | ||||| ||| || Sbjct 2227 GTATCGATGAGACCCTCACGACCACCCATGGCATGGAAGAAGAACTCTTGAGGTGTGAGA 2168 Query 302691 CCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGT 302750 || | ||| || | |||| || |||||||| ||| || || ||| |||||| Sbjct 2167 CCACGCAAGTAA-CTGTTCTCGACAAAACCACGACTCTCTGGTCCATAGTCATCCTTGGT 2109 Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810 || || || || || | ||| | |||| | ||||||||||| || || |||||||| Sbjct 2108 GAAATGAGGAAGTGTACGGTTTTGGAAGCCAAAGGGGATACGCTTACCTTCGACGTTCTG 2049 Query 302811 CTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTG--CCCTTGGAGCCAGCA 302868 ||| || | || | ||||| || || ||||| ||| | | |||||||| |||||| Sbjct 2048 CTGACCGACACAGGCCATCATTTGTGAGATATT--AATGAAAGAACCCTTGGAACCAGCA 1991 Query 302869 TTTACCATA 302877 || |||||| Sbjct 1990 TTGACCATA 1982 >seq457 Length=52601 Score = 152 bits (168), Expect = 2e-31 Identities = 188/257 (73%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 || || | |||||| ||| ||| || || || | ||| ||| ||| ||| |||| Sbjct 20953 GCAATCAAACCACAAATATCACAAACGTGTACACGGTAGCTATCTGATTGATCAAATAGA 20894 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523 || | ||| ||| | | ||||| || || |||||||||||||||||||| |||||| Sbjct 20893 CGCTCTTTGAGGAACTGGGCGGCACCATGGGAGATCATACAATCACGCTCCATCTCACCG 20834 Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATA 251583 ||||||||||||||||| || | | ||||||| | || ||||| ||||| | || Sbjct 20833 AAACGAAGACCACCATCACGTGAACGACCCTCGACTGGTTGACGGGTGAGGATCTGCACT 20774 Query 251584 GGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAAT 251643 ||||| || || || ||| || | |||||||||||||||||||||||| | Sbjct 20773 GGACCACGTGAACGTGAGTGAATCTTGTCGTCGACCATATGCTTGAGACGCTGGTAGTAG 20714 Query 251644 GCGGGACCGATGAAGAT 251660 | ||||||||||||||| Sbjct 20713 GTGGGACCGATGAAGAT 20697 Score = 87.8 bits (96), Expect = 5e-12 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 ||||| || | |||||||||||||| ||||| ||||| | ||| |||||||||||| | Sbjct 20872 GCACCATGGGAGATCATACAATCACGCTCCATCTCACCGAAACGAAGACCACCATCACGT 20813 Query 233333 GACCTACCCTGGACTGTTTGACGAGTTA-AAACAGTTCTTGGACCCTGAGCACGATAATT 233391 || | ||||| ||||| |||||| || | | | | | |||||| | | ||| | | Sbjct 20812 GAACGACCCTCGACTGGTTGACGGGTGAGGATCTGCAC-TGGACCACGTGAACGTGAGTG 20754 Query 233392 AATTTTATCTTTAACCATATGCTTCAG 233418 ||| || || | ||||||||||| || Sbjct 20753 AATCTTGTCGTCGACCATATGCTTGAG 20727 >seq53 Length=825717 Score = 150 bits (166), Expect = 5e-31 Identities = 356/527 (68%), Gaps = 27/527 (5%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 || ||||| | || | ||| |||| || ||| | | ||| |||||||| ||||| Sbjct 713021 CTGTCAAAACGTCCTGCACGCATTAAAGCCTTGTCAAGAACATCAGCTCTGTTGGTTGCC 713080 Query 288910 GCCAATACAACAATAGATTCG-GTTTGCTT-AAATCCATCCATACTTGTTAA-AATTTGA 288966 || || |||| || || | ||||| ||| |||||||| ||||| |||| | Sbjct 713081 GCTAAAACAAT--TACGTTAGAGTTTGTACCAAAACCATCCATTTCTGTTAGTAATTGGT 713138 Query 288967 TTAA-GTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCT----CC 289021 |||| |||||| || ||||| || ||| || | || | || ||| || Sbjct 713139 TTAACGTGTTT--TCTCTTTCGTCGTTT---CCGCCAGA------CATATTGCTTTTTCC 713187 Query 289022 tttt--tttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCT 289079 | || | |||| ||||||||||| || ||||||||||| | ||||| |||| | | Sbjct 713188 TCTTGCTCTACCTACAGCATCAATCTCATCAATGAAAATAATTGCTGGAGATTTTTCTTT 713247 Query 289080 CGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAA 289139 || | ||||| || | |||||| ||||| |||| || ||| ||||||| || || Sbjct 713248 TGCCTGTTTGAATAAGTCACGTACACGAGATGCACCAACTCCCACAAACATTTCAACGAA 713307 Query 289140 TTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAG 289199 |||||| | |||| | || | || | |||||| ||||| || || | || | Sbjct 713308 ATCAGAACCTGATAAAGAGAAAAACGGAACTTGTGCTTCTCCTGCAACAGCTTTTGCTAA 713367 Query 289200 AAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC 289259 | || ||||| ||||| || ||||| | | || | |||| ||||| | ||| | || Sbjct 713368 TAACGTTTTACCAGTTCCCGGAGGTCCTACAAGTAAAGCTCCTTTTGGAATTTTACCTCC 713427 Query 289260 AGCAGACT--TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATAT 289317 | ||| | ||||||| |||||| | || | ||||| |||||||||| || ||| | | Sbjct 713428 A--AGATTAGTATATTTTTCAGGGTTTTTAAGGAATTCAACAATTTCCTGAATTTCTTCT 713485 Query 289318 TTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAATATTAATATC 289364 ||||| | || | ||||| ||||| ||| ||| | || ||||| Sbjct 713486 TTTGCACCTTCTAAACCTGCAACATCTTTAAATGTAGTTTTGATATC 713532 >seq2491 Length=10632 Score = 145 bits (160), Expect = 2e-29 Identities = 664/1036 (64%), Gaps = 28/1036 (3%) Strand=Plus/Minus Query 155319 GCCGCAAAATAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCTCAGATGTA 155378 || || |||||||| || ||||| || | |||||| | |||| ||| | ||| | | Sbjct 6649 GCAGCGAAATAAATCGTTTCAAAAATTTCTTTATTTAAAATTTTTGCCCCTTCACTTTCA 6590 Query 155379 AATGCGATATCCATCTTGAAAAATGTGTCGGCTAAACCCTGAACTCCAATACCGACTGGG 155438 |||| | | |||| || ||| | || || || ||||| || || | ||| ||||| Sbjct 6589 AATGGTAAACGCATCAGGATAAAAGCATCTGCCAATCCCTGTACACCTAAACCAACTGGT 6530 Query 155439 CGATGCCTGTAATTGCTCCTGCTTGTCTTCTTGTTTGGG-TAAAAATTCACATCAATAAT 155497 | || | ||| | | | |||| | | || ||| |||| ||||||||| Sbjct 6529 CTGTGGCGCATGTTGGAATTTTTAG-CTTCCTCTACCGGATAATAATTATGATCAATAAT 6471 Query 155498 GTTATTTAAATTT---GTAACCA-ATACCTTGGTTACGTCTGCTAATTTCACATAGTCAA 155553 ||||| | || ||| || ||| |||||| || ||||||| || |||| Sbjct 6470 TTTATTCAGGTTCAGGGTAGCCTGATA----GGTTACATCATATAATTTCTGATGATCAA 6415 Query 155554 ATGTTTTATCC-TCATTTACAAA-CATACCAAGACCAATAGACGCCAGATTACATACCGC 155611 | | ||| | | ||||| | | ||| |||| || ||||| |||||||| || Sbjct 6414 AC----TCTCCGTTGATGACAAATCTTGGCAAAGCCAAC-GAGGCCAGGTTACATACAGC 6360 Query 155612 AGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGT 155671 | ||| | | | | || |||| ||| || || ||||| ||||| |||||||| Sbjct 6359 AACCTCGTCTTTGGAAGTATACTCTATAATTTCTGTACAAAGGTTGGAACTTTTGATGGT 6300 Query 155672 GCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGT 155731 |||||||| | |||||| ||||| ||||| ||||| || || | | || ||||| Sbjct 6299 TCCTAAATTTTGCTGGTTGGATTTGCTGTTTGCTGCATCTTTATACAACAGATAAGGGGT 6240 Query 155732 TCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTT 155791 ||| || || ||||||| |||||||| | ||| || || | || ||||| || Sbjct 6239 TCCGGTTTCAATCTGTGAATCCAGAATGGCAAACCAAAGCTCTTGTGCTTTAATGGTTTT 6180 Query 155792 GTTGTATCTGCCTTCCGACTCATATT--TCATATACAGCGTTCGGTAATCCT-CACCGTA 155848 | | ||||| || || ||||||| ||| | || ||| || |||| | Sbjct 6179 ACGGGCACGTCCTTCTTTTTCGTAACGCTCATATAAAGCAT-CG--AATTCTGCACCAAA 6123 Query 155849 ACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGAT 155908 ||||| |||||| ||| | || || || || | ||| | || | Sbjct 6122 GCAATCTGCCAGTCCCGGGGCTTCATGAGGACAGAATAAACTCCAGTCTCCGTTTTCTTC 6063 Query 155909 TACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGA 155968 ||| | ||| || | |||| |||||| |||||||| | || || || Sbjct 6062 TACCCTTCTCATGAACAGGTCACATACCCAAAGGGCATAGAATAAATCTCTGGCACGAAG 6003 Query 155969 CTCCTCATCGCCGTGATTCTTCCGTAGCTCTA-AGAATTCCTCAATATCAGGATGGTGTG 156027 || || | || || || || || || || | | || || || ||| | ||| || Sbjct 6002 TTCTTCTTTACCATGGTTTTTACGCAGGTCCAGAAAACTCAGCAC-ATCTGCATGCCATG 5944 Query 156028 GCTCCAGATACATAGCAAAACTACCATTCCTCTTGCC---ACCCTGATCTACATACCGAG 156084 ||||||| || || |||||| ||| || | || || |||||| || ||||| || | Sbjct 5943 GCTCCAGGTAAATGGCAAAAGCACCTTTACGTTTACCTCCACCCTGGTCCACATAACGGG 5884 Query 156085 CAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGC 156144 | || | || || || | |||||| | ||| |||||| || || || ||||| | Sbjct 5883 CGGTATCGTTAAATACTTTCAACATAGGTACAATCCCATTGCTGGTCCCGTTTGTTCCAC 5824 Query 156145 GAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATT 156204 ||||| || || | | || | ||||| || || ||||||||||||| | || Sbjct 5823 CAATATAAGATCCCGTGGCACGGATGTTATGGATGCTTAAACCAATACCACCTGCGCTTT 5764 Query 156205 TAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCA 156264 ||||||| |||| || |||| ||||| | |||| ||||||||| || || | || Sbjct 5763 GTGAAATTTTAGCGGTTTGTTTTAAAGTATCGTAAATTCCTTCAATACTGTCGTCCTGCA 5704 Query 156265 TTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAG 156324 | | |||| | |||| ||| | ||||||| || || | || || |||| || | Sbjct 5703 TGGTCAGTAAAAAGCAGGAAGACATTTGAGGTTTAGGGGTAGCTGCATTAAATAAAGTTG 5644 Query 156325 GTGTTGCATGAATAAA 156340 | |||||||| |||| Sbjct 5643 GGGTTGCATGCGTAAA 5628 Score = 107 bits (118), Expect = 6e-18 Identities = 251/376 (67%), Gaps = 16/376 (4%) Strand=Plus/Plus Query 133211 CATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAAT 133270 ||||| |||||| || | || ||||||||||| ||||| || ||||| |||||| Sbjct 4130 CATTTCATTTCTCATATACTTGCTTTTTTTGCTGCAAGTGACGGCATTGTAAATGAAAAC 4189 Query 133271 TTAG----GAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGG 133326 | | |||| || ||| | ||||| || || ||||||||||| |||||||| Sbjct 4190 CTTGCAGTGAAC----TTCATGAGCGAAGTACAGCTTCCCGAAGCCCGTTGTTTTTATGG 4245 Query 133327 GCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTAATTGATACTTA 133386 | ||||| ||||||||| ||||| ||| || ||| | || || ||||| || Sbjct 4246 CTTCCAGATCATGATGGAAAACATCCACTCTGAAACCTATGCGCTGCTGATCGATACCTA 4305 Query 133387 CATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATTAGCGA-ATTTCCTTGTA 133445 || |||||| | | | || ||| || ||| | ||| ||| || |||||||| Sbjct 4306 TATTAAAGATCCTGAAGAAAAAGACAGGCTGTTCCATGCC-GTAGAGACGGTTCCTTGTG 4364 Query 133446 TTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTA 133505 | || || ||| | || ||||| | ||||| ||| | | | |||||| Sbjct 4365 TAAAGAAAAAAGCAGAATGGGCATTGCGCTGGATTGAGG------GCGGAAATTTTGCCG 4418 Query 133506 CTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTA 133565 ||| | || ||||| || | ||| || |||||||| ||||| || ||||| || | Sbjct 4419 AACGTTTGGTGGCTTTCGCCGCAGTGGAAGGCATTTTCTTCAGCGGGAGCTTCTGTTCGA 4478 Query 133566 TTTTTTGGCTTAAAAA 133581 | || ||| | ||||| Sbjct 4479 TCTTCTGGTTGAAAAA 4494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471565246753734