Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq5514 334 2e-87 seq10553 185 3e-42 seq2755 147 7e-31 seq892 136 1e-27 seq3745 82.4 2e-11 >seq5514 Length=778 Score = 334 bits (370), Expect = 2e-87 Identities = 520/752 (69%), Gaps = 46/752 (6%) Strand=Plus/Plus Query 39384 ACCTGCTCCTGGTAGATGATCAACTGGAATGTCGGGTCCAGGATCTCCGACAGGGACTCG 39443 |||||||||||||||||||| | | | | | | ||||||||||| | || | | | Sbjct 24 ACCTGCTCCTGGTAGATGATGAGCCCGTAGGACTCCTCCAGGATCTCGGCGAGCGGCGCC 83 Query 39444 GCCACCTCGGGGTGGATCGGCGTGATCGCCTGCTGCCCGTTCTTCCGGAGGGCGTAGTTC 39503 ||| |||||||||||||||||||||| ||||| ||||||||| || || || |||||| Sbjct 84 TCCAGCTCGGGGTGGATCGGCGTGATCTCCTGCACCCCGTTCTTGCGCAGCGCATAGTTC 143 Query 39504 GTGTGAGACCCCACGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCTGAGATGTCC 39563 ||||| || | ||||| |||||||| || ||||| |||| || ||| |||||||| Sbjct 144 GTGTGCGAGTTGGCTCCCATGGGACCCGGCCGATACAGGGCGATGAGGGCCGAGATGTCA 203 Query 39564 TCGAAGTTGTCCGGCTTCAGCAGGCGGAGCAGTGAGCGCATC------------------ 39605 |||||||||| ||||||| ||| || | || Sbjct 204 CCGAAGTTGTCGGGCTTCATCAGACGCATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNN 263 Query 39606 ------------------GCGCCG--CCGTCGAGCTGGAAGACCGAGAGCGTGTCGCCCC 39645 ||| || | ||||||||||||||| || |||||||| | Sbjct 264 NNNNNNNNNNNNNNNNAAGCGGCGGGCTGTCGAGCTGGAAGACGCCCAGGGTGTCGCCGC 323 Query 39646 TGGCCAGCAGCTCGT--AGGTCGGGGCGTCGTCCAGA--GGGATGTTCTCCAGGTCGACG 39701 || ||||||| || | | |||| |||||| ||| | ||||| || ||||||| Sbjct 324 GCGCGAGCAGCTGGTACACGCCGGG--GTCGTCGAGACCGAGATGT--TCGAGGTCGAGC 379 Query 39702 TGCTCCCCACGGTTGAGGCGGATGTTCTCGACCGCGTCGCCCATGATCGTGAGGTTCCGG 39761 | || |||||||| ||||||||| |||| ||| || |||||||||||||||||| Sbjct 380 TCTTCGCCACGGTTCGTGCGGATGTTGTCGAGCGCATCCGAGATGATCGTGAGGTTCCGG 439 Query 39762 AGCCCGAGGAAGTCCATCTTCAGCAGGCCCAGAGCCTCGCAGCTCGGGTAGTCGAACTGC 39821 ||||| |||||||||||||| | ||| || || | |||||| |||||||||||||||| Sbjct 440 AGCCCCAGGAAGTCCATCTTGATCAGACCGAGGGACTCGCACGACGGGTAGTCGAACTGC 499 Query 39822 GTGATCGTCGCGCCGTCCTGCGGCCGAACCCACACCGGGATGTGGTCGACCAGAGGCTCG 39881 |||| || ||| ||||| || | | ||| ||| ||||| || || ||| Sbjct 500 GTGACGATCTGCCCGGCCTGCTCGCGGCGCATGATCGGAATGATGTCGAGGAGCGGATCG 559 Query 39882 TCGGACATGATCACACCGGCTGCGTGCACACCCATCTGCCGGACGAGACCTTCGAGACCG 39941 ||||||||||| ||||| |||||||| ||| ||| || || ||||||||||| Sbjct 560 GACGACATGATCACGCCGGCGGCGTGCACGCCCCACTGGCGCTTCAGCCCTTCGAGACCC 619 Query 39942 AGCGCGGTGTCGATGACCTCCTTGGCGTCCGGGTCGGAGCCGTAGATGCCCCGGATCTCG 40001 |||||| ||||| |||| ||| || || || || | || | | || || |||| Sbjct 620 AGCGCGCGGTCGAAGACCGTCTTCGCCTCGGGATCCGTCTCGATCAGGGTCCTGAACTCG 679 Query 40002 GCGGCCTCCTCGTACCGAGGGTGCTCGGCGTTGAAGATGCCTTCGAGGGGCATCGAGTTG 40061 || |||| ||||| ||||| | | || ||| ||||| ||||||||||| ||| Sbjct 680 CTCGCTTCCTTGTACCTCGGGTGAGCAGAGTCGAACATGCCGTCGAGGGGCATGTCCTTG 739 Query 40062 CCCATCACGTCGGCCGGGTACGCCTTGGTCAG 40093 ||||||||| | ||| ||||||||| || Sbjct 740 CCCATCACGGGCGGCGGCATCGCCTTGGTGAG 771 >seq10553 Length=379 Score = 185 bits (204), Expect = 3e-42 Identities = 272/383 (71%), Gaps = 9/383 (2%) Strand=Plus/Plus Query 38949 AGTCCGAAGCGGATCTCGTGCTCCCCGTTGGGGGTGAACGAGCTGTTCGAGACCGACACG 39008 || ||||||||||| |||| | ||| || | ||| || || ||||| | || || Sbjct 1 AGGCCGAAGCGGATGTCGT---CGCCGACGGCCGCGAAGAAGTTGATCGAGTCGGAGACA 57 Query 39009 TCGGGCGGCAGGACCCGAAGGCCCATGCGCCGTGCCTCGCCGAGGTACGTGGCCATCTTG 39068 |||||||| |||||| | ||||||||| || ||| ||||| ||||||||| Sbjct 58 TCGGGCGGAAGGACCTTGATGCCCATGCGGCGGCACTCATTCAGGTAAAGCGCCATCTTG 117 Query 39069 TTCTTGTCGTCGCCCACCGAGGTGAGCGCAGCCGCCATGTACTCGGCCGGGTAGTGCGTC 39128 | |||| |||||| || ||||||| ||||||||||||||||| |||||||||| | Sbjct 118 TCCTTGGAGTCGCCGACGCTGGTGAGCAGCGCCGCCATGTACTCGGCGGGGTAGTGCGCC 177 Query 39129 TTCAACCACGCCGTGCGGTACGCGATGAGTCCGTACGCCGCCGAGTGCGCCTTGTTGAAG 39188 || | | || || | |||| || ||| ||||| || || ||||| || ||||||||| Sbjct 178 TTGAGGTATGCGGTCCAATACGAGACGAGACCGTATGCGGCGGAGTGGGCTTTGTTGAAG 237 Query 39189 GCGTAGCCAGCGAAGGGGACCAGCACGTCCCACACTGCCTGGATGGCACCGTCCGAGTAG 39248 |||||| | | |||||| | ||| | |||||||| |||| |||||| | || | | Sbjct 238 GCGTAGTCCGAGAAGGGCAGCAGGATGTCCCACAGCGCCTTGATGGCCGCCTCGCCGAAT 297 Query 39249 CCTCGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGG---GC 39305 || |||||| | || | |||| || ||| |||| | || ||||| | Sbjct 298 CCGCGCTCGGTCATACCGCCCGCGAAGCCTTCGTACTGCTTGTCGAG---CTCGGACTTC 354 Query 39306 TTCTTCTTGCCCATCGCCCGGCG 39328 ||||||||||||||||| || || Sbjct 355 TTCTTCTTGCCCATCGCTCGACG 377 >seq2755 Length=1107 Score = 147 bits (162), Expect = 7e-31 Identities = 440/660 (67%), Gaps = 22/660 (3%) Strand=Plus/Minus Query 40715 CATCTCTTCGGCGGACTTCAGGTAGTACCCGGAGCCCTCGAAGCGGAAGCGGTTCGGGTT 40774 |||||| | |||| ||| | |||||||||| ||| ||||| ||| |||||||||| Sbjct 887 CATCTCGGCCGCGGTCTTGATGTAGTACCCGTCGCCGTCGAACTTGAACCGGTTCGGGTC 828 Query 40775 GTCGAGCGTGGTGCCGGTCTGGACGCACAGCAGTGCATCGTGAGCGACCGACTCCTCGGC 40834 ||| | ||| | || | ||| |||||||| || || ||||| ||| | | ||| | | Sbjct 827 GTCCATCGTCGATCCCGACTGCACGCACAGGAGCGCCTCGTGCGCGTCGGCCTCGT-GCT 769 Query 40835 GGTGAC-GTAGTGGGAATCGTTCGTGACCACCGGAGTGAGCGCGAGGTGCTTCCCGAGCC 40893 | || |||||| || ||||| ||| | ||| | | || |||| |||| ||| | Sbjct 768 GATGCGTGTAGTGCGAGTCGTTGGTGGCGACCAGCGGGATGTTCAGGTCCTTCGAGAGAC 709 Query 40894 GGTACAGGTCG-TCACGGACCCGGCGCTCGATCTCGATGTCGTGGTCCATGAGTTCGAGC 40952 || || ||| ||| || || ||||||||| | |||||||||||| ||| Sbjct 708 GGAGGAGATCGGTCATC-ACGCGCCGCTCGATCGACAGACCGTGGTCCATGATCTCGGCG 650 Query 40953 AGGTACCGGTCACGCCCGAAGACCTCCAGGTACCGACCAGCCTCCTTCACG-GCCTCGTC 41011 | ||| || ||||| | ||| || || | || || | || || |||| Sbjct 649 AAGTAGTTCTCCTTGCCGAACAGGTCCTGGAACTCGGCTGCGGCCG-CGCGCGCAGCGTC 591 Query 41012 GTACTGCCCGAGGTTGAGCCGGGTCATGATCGCACCGCCAGGGCAGCCAGTCGTGACGAC 41071 |||||| ||||| || || ||| |||| | || ||||| || || || ||| Sbjct 590 GTACTGTCCGAGACGCAGGCGCGTCTGGATCTCGCCTGACGGGCATCCGGTGGTCGCGAT 531 Query 41072 CAGGCCCTCGTTGT-GCTCGGCGACCAGCTCGAAGTCCATGCGCGGGTACTTCCCG-AGC 41129 ||| || | | | | || || | ||||||| |||||||||||| ||| | || Sbjct 530 CAGTCCTTTGGAATAGGTCTGC-AGCAGCTCGCGGTCCATGCGCGG---CTTGAAGTAGT 475 Query 41130 AGGCCCTCCTGGTACGACCGAGAGCTGAGCTTCATGAGGTTGTGGA-GCCC--GGTCTTG 41186 || |||||| | |||||| ||||||||| | |||||||| | |||| ||| | Sbjct 474 AG-CCCTCCATGCTCGACCGGGAGCTGAGCCGGAACAGGTTGTGCATGCCCTCGGTGCTC 416 Query 41187 TTCGTGGAGAGGATCGTGAGGTGCGTGTACGCGCCGTTGCCCGACACGTCGTAACGCTTC 41246 | | | | | || || || |||||||| ||| ||||| ||||||| | |||| Sbjct 415 TGACTCCACATGGTCATGTGG---GTGTACGCACCGGAACCCGAGACGTCGTCGCTCTTC 359 Query 41247 TGTTCGGGGGCTCCCCACTTGACGCGC-TCCTGGCTCTGCCT--CTTGTCGGGTGCCATG 41303 || ||||| | ||||||| |||||| || || | |||| | || |||| | | Sbjct 358 TGATCGGGCGAGCCCCACTGCACGCGCGTCTTGTCACTGCGGTGCGTGCCGGGAGTGACA 299 Query 41304 TAGGCTTCGATCCCGATCACGGGGATGATGCCAGCCTCGGTCGCGGCCTTGTAGAACTCG 41363 ||||| |||| |||||| | || ||| || || | | || ||||||||||||||| Sbjct 298 TAGGCCTCGAGCCCGATGATCGGCTTGACACCCGCGGCATTGGCCGCCTTGTAGAACTCG 239 >seq892 Length=133947 Score = 136 bits (150), Expect = 1e-27 Identities = 262/381 (69%), Gaps = 4/381 (1%) Strand=Plus/Minus Query 40111 AGGGCTTGTCGAGCACGCGAGCCG-CGTCCTTCATCGCGTTGCGCGCCTTGATCCGTCCG 40169 ||||| | ||||||||||| |||| |||| || | || |||||||| | | |||| Sbjct 124952 AGGGCATTTCGAGCACGCG-GCCGACGTCGCGCAGCACGGCGCGCGCCTGCAGCGTTCCG 124894 Query 40170 TACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGA-CGTACTGGATGAC 40228 | || ||||||||| |||| ||| || ||||| | ||| | || ||||||| Sbjct 124893 AAGGTGATGATCTGCGCCACCTGATCGCGGCCATACTTG-GCCTGAACATAGCGGATGAC 124835 Query 40229 CTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGG 40288 |||| | || ||| | | |||||| ||||| | |||||||| || ||||| ||||| Sbjct 124834 CTCGTCGCGCCGCTCCTGACAGAAGTCAATGTCAAAGTCGGGCATCGAGACGCGGTCGGG 124775 Query 40289 GTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAG 40348 || |||||||| ||||| | || | |||||| |||| |||||||||| || Sbjct 124774 ATTGAGGAAGCGTTCGAACAGCAGGGAGAAGCGCAGCGGATCGACGTCGGTGATCGTCAG 124715 Query 40349 GACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTT 40408 | ||||| || |||||||| || | ||||| || || || ||||| | | | Sbjct 124714 CGCATAGGCAACGAGCGAACCCGCACCGGAGCCACGACCGGGACCGACAGGAATATCATG 124655 Query 40409 CTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTG 40468 | |||||||| ||| ||||| | |||| ||||||||| ||| | |||| | Sbjct 124654 GGCTTTCGCCCATTTGATAAAGTCGGAAACGATGAGGAAGTAACCCGGATATTTCATCCG 124595 Query 40469 GATGATCATGTCGATCTCGTA 40489 | |||| ||| ||||| || Sbjct 124594 GGTGATGATGGAAATCTCATA 124574 Score = 87.8 bits (96), Expect = 6e-13 Identities = 188/279 (67%), Gaps = 24/279 (9%) Strand=Plus/Minus Query 39307 TCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCCAGGGTGTACCCGGCCATGA 39366 ||||||| ||||| || ||||| ||||| ||||| | ||||| || || |||| ||| Sbjct 125711 TCTTCTTACCCATGGCACGGCGCAGCAGATCGGCTTCGCCCAGCGTATAGCCGGACATTT 125652 Query 39367 CCTGTGCAACCTTCTGCACCTGCTCCTGGTAGATGATCAACTGGAATGTCGGGTCCAGGA 39426 |||| || | || | |||||| |||||||||||||| | | || || Sbjct 125651 CCTGCGCGATCTGCATCACCTGTTCCTGGTAGATGATGA------------CGCCCTGGG 125604 Query 39427 TCTCC--GACAGGGACTCGGCCACCTCGGGGTGGATCGGCGTGATCGCCTGCTGCCCGTT 39484 | ||| ||| | || | | | | || ||| ||||||| || ||| ||| | || || Sbjct 125603 TTTCCTTGAC-GAGA-TGGTCGATCTTGGGATGGATCGACGCCATCTCCTCGTCGCCATT 125546 Query 39485 CTTCCGGAGGGCGTAGTTCGTG-TGAGACCCCACGCCCATCGGACCCGGACGGTACAGCG 39543 ||| || | |||| ||| | || |||||||||||||||||||||||| Sbjct 125545 CTTGCGCGCGTTGTAGGTCGGGATG-------TTTTCCATCGGACCCGGACGGTACAGCG 125493 Query 39544 CGACGACGGCTGAGATGTCCTCGAAGTTGTCCGGCTTCA 39582 | || | || ||||||||||| ||| ||||||| Sbjct 125492 CCACAAGCGCGATGATGTCCTCGATCCGGTCGGGCTTCA 125454 >seq3745 Length=368 Score = 82.4 bits (90), Expect = 2e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 39260 CGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCAT 39319 ||| |||| ||||| || || | |||||||| | | ||| |||||||||||| Sbjct 365 CGCGCCCTCGCGGAAGATCTCGCGGTGCTTGGCCATTTCGGCCGGCACCTTCTTGCCCAT 306 Query 39320 CGCCCGGCGAAGCAGGTCGGCCTGACCCAGGGTGTACCCGGCCATGACCTGTGCAACCTT 39379 ||| ||||| ||||||||||| || || | ||| ||| ||| || ||| || | || Sbjct 305 CGCGCGGCGCAGCAGGTCGGCGCCGCCGAGCGAGTAACCGCCCACGATCTGCGCCATCTG 246 Query 39380 CTGCACCTGCTCCTGGTA 39397 | ||||||||||||||| Sbjct 245 CATCACCTGCTCCTGGTA 228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163298845851876