Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_021343.1 Length=35430 Score E Sequences producing significant alignments: (Bits) Value seq3418 176 1e-39 seq1269 165 2e-36 seq3006 132 1e-26 seq2422 87.8 4e-13 >seq3418 Length=506 Score = 176 bits (194), Expect = 1e-39 Identities = 270/384 (70%), Gaps = 17/384 (4%) Strand=Plus/Minus Query 9444 CGGGACGATGCCAAGCAACTGCGGCGGAACGCGATGGGCCGCGAGCGTGTCGTCGCGCGT 9503 ||| ||||||||||||| ||||||||| ||||| | ||||| ||| ||||||||||||| Sbjct 497 CGGCACGATGCCAAGCAGCTGCGGCGGCACGCGCAGCGCCGCCAGCATGTCGTCGCGCGT 438 Query 9504 CACGTTCTTGATGTCGAAAAACTGGTCTTTCGCTGCAACCTCCGAAATCGGGATCAGTTG 9563 |||| |||||||| | |||| || || || || ||||| | |||||| | || Sbjct 437 CACGCCCTTGATGTTGGCGAACTCATCCTTGGCCGCCACCTCGCTCACCGGGATGATCTG 378 Query 9564 GACCGCGCCTTTTTTCGCCGCCGCTGTTTCGCGCGGCCGAGTGCAGAAACAGGTTCCGGA 9623 | || |||| || || ||| || ||| |||| ||||||||||||| Sbjct 377 CAGACCGTCTTTCTT-------GCCGTT------GGGCGAATGCACGAACAGGTTCCGGA 331 Query 9624 AATTACCGATGCCCTTCGAGTCGCGT--AACGCCTTCCGGATCGCGTCTACGTCGTCCGG 9681 | || || || || | ||| | | ||||| || | || ||||||| || Sbjct 330 AGTTGCCCGGACCA--CGTGCCGCCTTGAGCGCCTCGCGCAGGCCGGTTACGTCGGACGA 273 Query 9682 GTCCATGTTCGGGTCGTTGAGGTACAGGATGAACCCGGCGTGCGAGCCGTTCGCGTAGTA 9741 ||| | | ||| | ||||| |||||||| ||||||||||||||||| |||||| Sbjct 272 TTCCGCCTGGGAATCGGTCAGGTAGAGGATGAAGCCGGCGTGCGAGCCGTTGTTGTAGTA 213 Query 9742 GCGGCGCCGGAACAGGGTGGCGGACTCGTTCAACCACGCGGATTGCAACGATGCGATGTA 9801 |||||||||||| ||||| |||||||| | | ||||| |||| | | || | Sbjct 212 CTTGCGCCGGAACAGCGTGGCCGACTCGTTGAGCAGCGCGGCCTGCACGGCCGGCATCCA 153 Query 9802 CTCGGGCATCCCGTACACCTCCTG 9825 |||||||| |||||||||||||| Sbjct 152 CTCGGGCAGGCCGTACACCTCCTG 129 >seq1269 Length=1066 Score = 165 bits (182), Expect = 2e-36 Identities = 311/449 (69%), Gaps = 24/449 (5%) Strand=Plus/Plus Query 12328 GAGGGCGCGACGACGGACGGTCGCGTTATCACGCGACAGCAGATTCAGGAAATGGCGGAC 12387 || ||||| || || || || ||||| ||| ||| |||||||| ||||||||| || Sbjct 562 GAAGGCGCCACCACCGATGGCCGCGTGATCGAGCGCCAGCAGATCGTGGAAATGGCTGAA 621 Query 12388 ACGTACAACCCGGCGACGTATGGCGCGCGCGTGTTTCTCGAACACTATCGGGGCGTCCTT 12447 || ||| |||||| | || ||||| || | | | || ||||| || ||| || Sbjct 622 ACCTACGACCCGGAGGTCTACGGCGCCCGGATCTGGATGGAGCACTACCGCAGCGCGCTG 681 Query 12448 CCGGATGGCCCTTTTCGTGCATATGGCGACGTGAGGGCGGCCGAAGCTCGGACG-GTCGA 12506 ||||| |||| || || || || ||||||||| |||| | | || || | ||||| Sbjct 682 CCGGACAGCCCGTTCCGCGCCTACGGCGACGTGGTCGCGGTCAAGGC-CGAAGAAGTCGA 740 Query 12507 A---GAGGGCAAGC------TCGCGCTGTTCGCACAGGTCGACCCGACGAACGATCTCAA 12557 | | |||||| | ||||||||||| |||||||||||||| || || Sbjct 741 AATCGCCGGCAAGAAGAAGATGGCGCTGTTCGCCCAGGTCGACCCGACCGCTGACCTGGT 800 Query 12558 GGAATTGGCAAAAGCGCGC---CAGAAAGTCTATACGAGCGTCGAGATCGCGCCGAATTT 12614 || ||| || | |||| ||||| |||| || ||| ||||||| || ||| | || Sbjct 801 CGACATGGTCAACGTGCGCAAGCAGAAGGTCTTCACCAGCATCGAGATTGCCCCGGAATT 860 Query 12615 CGCGGACAGCGGAAAAGCGTACCTCGTA-GGCCTCGGCATCACGGACAGTCCCGCGAGCC 12673 || |||||||| || || ||||| ||| ||||| ||| | ||||| || || ||| Sbjct 861 TGCCGACAGCGGCAAGGCCTACCT-GTACGGCCTGGGCGTGACGGATTCGCCGGCCAGCA 919 Query 12674 TCGGAACCGAAATCCTGACGTTCGCG--CAGCAACATCCGGA-----CCACTTCAAGGCC 12726 |||||||| | || ||| | ||| || || ||| ||| | || ||||||| | Sbjct 920 TCGGAACCAACATGCTGGCCTTCTCGGCCAAGAACC-CCGAAGACAGCCCGTTCAAGGAC 978 Query 12727 CGCAAGCAGGCCCCGGAAAACCTCTTTTC 12755 ||||||||||| |||| |||||| || || Sbjct 979 CGCAAGCAGGCGCCGGGAAACCTGTTCTC 1007 >seq3006 Length=629 Score = 132 bits (146), Expect = 1e-26 Identities = 192/271 (71%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 26150 GATCGATCAACAAACCGGCTGGCATAAGACGCTCTCGAACGTCGCTGTGAATGGCGTCGA 26209 ||||||| | || |||||||||||| |||| || ||||| || || ||||| Sbjct 5 GATCGATGAGCAGCAAGGCTGGCATAAGTCGCTGTCCAACGTGGCCGTAGCCGGCGTGAC 64 Query 26210 AGGGATCAGCAAGCCGGTTTCGTGGGATTTGCAGAACCCGGCGACCGATGCGGGTTTCCT 26269 || |||||| | || ||||| ||||| | ||||||||||| || || | || Sbjct 65 CGGCATCAGCCGGGACGTCCATTGGGACCTGCAGGATCCGGCGACCGACGCCGGCATGCT 124 Query 26270 CAACGAGAATCAGGTCACGACGCTGATCAACCGGAACGGCTTCCGATTCTGGGGCTCGCG 26329 ||| | | |||| |||||||||||| ||||| | | |||||||| ||||| Sbjct 125 CAATGCCGCCGATATCACCACGCTGATCAACTCCAACGGGTACAAGTTCTGGGGATCGCG 184 Query 26330 CACGGCGTCCGACGATCCGCTGTTCGCGTTCGAAAACTACACGCGCACGGCGCAGGTGCT 26389 ||| ||| || |||||||| || ||||| | || ||| |||||||||||| | || Sbjct 185 CACCTGCAGCGATGAGCCGCTGTTTGCCTTCGAGACCTCCACCCGCACGGCGCAGATCCT 244 Query 26390 GGCCGATACGATGGCCGAAGCACAGATGGTC 26420 |||||| || || ||||| || ||| ||||| Sbjct 245 GGCCGACACCATCGCCGAGGCGCAGTTGGTC 275 >seq2422 Length=594 Score = 87.8 bits (96), Expect = 4e-13 Identities = 195/276 (71%), Gaps = 14/276 (5%) Strand=Plus/Plus Query 10378 GGTTCGTTATCGAGCGCGTGAAGGCAG-GCCCATGCGAGGTCAGCGTGGCCGATTTCTTC 10436 |||||||| | || || || || ||| ||||| || || || ||||||||| | | | Sbjct 322 GGTTCGTTCTGCAGGGCATGCAG-CAGCGCCCACGCCAGATCGGCGTGGCCGGTCG-TGC 379 Query 10437 GTTA-CGCGCGGCGGTGTAGGTCATCT-TCGTGCCGCTCGGCGTCATGGCTCGGC-GGAT 10493 | | ||| | || |||||||| ||| ||| |||||| | ||| ||| || | |||| Sbjct 380 GCGAGCGCCCCGCCGTGTAGGTGGTCTGTCG-GCCGCTGGCCGTGCTGG-TCTTCTGGAT 437 Query 10494 GGACAGGAACGATTGCGCGAGGTCGGTCATACCTGCGTCGAATTCCAGGCGCTTTTTCCC 10553 || || | ||| || | | ||||||| || ||||| ||||||| |||| ||| Sbjct 438 GGCAAGCAGCGACTGGGTCATGTCGGTCCAGCCGGCGTCATATTCCAGACGCTCGTTCTT 497 Query 10554 GATCAC--CGACATGCCTTTCAGGACAAGGCGGTTTTTCACTTCGGGCGAGTAATTGATC 10611 ||| || ||| | ||||| || || || || | ||||| ||||||||||| ||| Sbjct 498 GATGACATCGA-ACGCCTTG-AGCACCAGCCGCGTCTTCACCTCGGGCGAGTAGCTGAAG 555 Query 10612 G-GTACGACGCGCGGGAAGAACTGGCGCACAAGCTG 10646 | | | || | ||||||||||||||| || ||||| Sbjct 556 GTGGTCAAC-CCCGGGAAGAACTGGCGGACCAGCTG 590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113236402601728