Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_021531.1 Length=223989 Score E Sequences producing significant alignments: (Bits) Value seq1087 145 1e-29 seq1310 104 3e-17 seq93 93.3 6e-14 seq5955 87.8 3e-12 >seq1087 Length=202632 Score = 145 bits (160), Expect = 1e-29 Identities = 184/253 (73%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 98952 GACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTTGCAA 99011 ||||||||||| |||||||| | ||| | |||||| |||||||||| ||| | || Sbjct 83900 GACCGTACCGGGACAGGCACACGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTGTCG 83841 Query 99012 GAAGGTTTCCCGCTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATTATCCATGAACTG 99071 | ||||| || | ||||||||| || || || || ||||| || ||| Sbjct 83840 GCGGGTTTTCCTGCCCTGACGACCAAGAAACTGCATCTCAAATCCATCATCCACGAGCTG 83781 Query 99072 CTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCATT 99131 |||||||||||||||||||| || || ||| || || || || || || || || || Sbjct 83780 CTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCGTGACGATC 83721 Query 99132 TGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGGCGG 99191 ||||| |||||||| ||| | || ||||| ||||| ||||| || || | |||||||| Sbjct 83720 TGGGATGAATGGGCCGACGAGAACGGCGATCTCGGGCCGGTCTATGGCTATCAGTGGCGC 83661 Query 99192 GCATGGACTGCGC 99204 | ||| |||||| Sbjct 83660 TCCTGGCCTGCGC 83648 >seq1310 Length=146132 Score = 104 bits (114), Expect = 3e-17 Identities = 174/252 (69%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 98946 AAGAAAGACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAAC 99005 ||| | ||| | || || |||||||| | ||| || ||||| |||||| | |||||| Sbjct 104752 AAGCACGACAGGACGGGAACAGGCACCATCAGTATTTTTGGCCATCAGATGAGGTTCAAC 104811 Query 99006 TTGCAAGAAGGTTTCCCGCTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATTATCCAT 99065 | || ||||| || || ||||| || ||||| || | || |||||||| Sbjct 104812 CTCCAGGAAGGCTTTCCCCTGGTCACCACCAAAAAACTTCATTTAAAATCCATTATCCAC 104871 Query 99066 GAACTGCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTA 99125 |||||| | ||||| | | || ||||||||||| |||||||||| || |||| Sbjct 104872 GAACTGATCTGGTTTTTAAGTGGGGACACCAATATTGGCTACCTGAAAGCAAACAATGTA 104931 Query 99126 ACCATTTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAG 99185 | || ||||| || ||||| || |||| || ||||| || || || || || || Sbjct 104932 AAGATCTGGGATGAGTGGGCTGATGAAAACGGTGACCTGGGCCCTGTTTATGGATCACAA 104991 Query 99186 TGGCGGGCATGG 99197 ||||| ||||| Sbjct 104992 TGGCGTTCATGG 105003 >seq93 Length=584700 Score = 93.3 bits (102), Expect = 6e-14 Identities = 164/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 98952 GACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTTGCAA 99011 ||||| || || ||||| ||| | | || ||| ||||||||||||| | || Sbjct 272904 GACCGAACAGGAACAGGAACGAAAAGTGTTTTTGGCTACCAGATGCGTTTTGATTTAAGT 272845 Query 99012 GAAGGTTTCCCGCTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATTATCCATGAACTG 99071 ||||||||||| |||| ||||| || ||| | || || ||| | ||| || Sbjct 272844 GAAGGTTTCCCAATGGTTACGACAAAAAAACTCCATTTAAAATCGATCATCTACGAATTG 272785 Query 99072 CTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCATT 99131 || ||||| | ||||| || || ||||| | || || || || ||||| || | || Sbjct 272784 CTTTGGTTTTTAAAAGGAGATACAAATATTAAATATCTTAAGGAAAATGGAGTTAAAATC 272725 Query 99132 TGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGGCG 99190 |||||||||||||| || |||||||| | || || || ||||| | || ||||| Sbjct 272724 TGGGACGAATGGGCTGATTCTAATGGCGATTTAGGACCTGTTTACGGACATCAATGGCG 272666 >seq5955 Length=632 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 99585 AAGTTGTCTTGTCAGCTCTATCAGCGTAGTGCCGACGTGTTCTTGGGTGTGCCGTTTAAC 99644 ||| | || |||||||| |||||||| || |||||| ||||| | ||||||||||| ||| Sbjct 353 AAGCTCTCGTGTCAGCTGTATCAGCGCAGCGCCGACATGTTCCTCGGTGTGCCGTTCAAC 294 Query 99645 ATCGCGTCGTATGCTCTACTGATTCACATGTTTGCACAGCAGGCGAATATGGCGGTGGGC 99704 ||||| || || || | |||| ||| | || ||||||| | | | | || Sbjct 293 ATCGCCTCCTACGCCTTGCTGACCATGATGATCGCCCAGCAGGTGGGCCTCGAGCCCGGA 234 Query 99705 GATTTCGTCTGGACCGGCGGTGA 99727 || ||||||||||| ||||| || Sbjct 233 GACTTCGTCTGGACGGGCGGAGA 211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716516924579280