Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq10414 107 2e-18 seq445 91.5 2e-13 seq126 91.5 2e-13 seq446 89.7 6e-13 seq16 87.8 2e-12 seq237 86.0 7e-12 seq5 84.2 2e-11 >seq10414 Length=692 Score = 107 bits (118), Expect = 2e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 148131 CGGGGTGTAGCTTAGCTTGGTAGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTTCAAA 148190 ||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 500 CGGGGCGTAGCTCAGTTTGGTAGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTTCAAC 441 Query 148191 TCCTGCCACCCCGA 148204 ||||| | |||||| Sbjct 440 TCCTGTCGCCCCGA 427 >seq445 Length=5314 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 9772 TGGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGA 9830 ||||| |||||||||| ||| |||||||||||| ||||| |||||| |||| |||||||| Sbjct 1931 TGGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTCGA 1990 Query 9831 GTCCGCTATTCTCCA 9845 |||| ||||||||| Sbjct 1991 CTCCGTTATTCTCCA 2005 >seq126 Length=461790 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 148129 TACGGGGTGTAGCTTAGCTTGGT-AGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTTC 148187 ||||||||||||| |||| ||| | ||||| ||||||||||| ||||| ||||||||| Sbjct 171837 TACGGGGTGTAGCGTAGCCCGGTTATCGCGCCTGCTTTGGGAGCAGGAGGCCGCAGGTTC 171896 Query 148188 AAATCCTGCCACCCCGA 148204 |||||||||||||||| Sbjct 171897 GAATCCTGCCACCCCGA 171913 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/75 (87%), Gaps = 3/75 (4%) Strand=Plus/Plus Query 4931 GGGCGAATAGCTCAGC-GGT--AGAGCTACTCGTTTACACCGAGTCGGTCGGGGGTTCGA 4987 |||||| ||||||||| ||| ||||| ||||||||||||||| |||||||||||||| Sbjct 441733 GGGCGATTAGCTCAGCTGGTTCAGAGCACCTCGTTTACACCGAGGGGGTCGGGGGTTCGA 441792 Query 4988 TCCCCTCTTCGCCCA 5002 |||||| ||||||| Sbjct 441793 ACCCCTCATCGCCCA 441807 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/75 (87%), Gaps = 3/75 (4%) Strand=Plus/Plus Query 4931 GGGCGAATAGCTCAGC-GGT--AGAGCTACTCGTTTACACCGAGTCGGTCGGGGGTTCGA 4987 |||||| ||||||||| ||| ||||| ||||||||||||||| |||||||||||||| Sbjct 441963 GGGCGATTAGCTCAGCTGGTTCAGAGCACCTCGTTTACACCGAGGGGGTCGGGGGTTCGA 442022 Query 4988 TCCCCTCTTCGCCCA 5002 |||||| ||||||| Sbjct 442023 ACCCCTCATCGCCCA 442037 >seq446 Length=116643 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 9773 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 9831 |||| |||||||||| ||| |||||||||||| ||||| |||||| |||| |||||||| Sbjct 2102 GGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTCGAC 2161 Query 9832 TCCGCTATTCTCCA 9845 |||| ||||||||| Sbjct 2162 TCCGTTATTCTCCA 2175 >seq16 Length=320404 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 148131 CGGGGTGTAGCTTAGCTTGGT-AGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTTCAA 148189 ||||||||||| |||| ||| | ||||| ||||||||||| ||||| ||||||||| | Sbjct 239738 CGGGGTGTAGCGTAGCCCGGTTATCGCGCCTGCTTTGGGAGCAGGAGGCCGCAGGTTCGA 239797 Query 148190 ATCCTGCCACCCCGA 148204 ||||||||||||||| Sbjct 239798 ATCCTGCCACCCCGA 239812 >seq237 Length=124986 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 9773 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 9831 |||| |||||||||| ||| |||||||| ||| | ||| ||| || ||||||||||||| Sbjct 90234 GGGGGATTAGCTCAGCTGGCTAGAGCGCTTGCCTGGCAGGCAAGAGGTCAGCGGTTCGAC 90293 Query 9832 TCCGCTATTCTCCA 9845 |||||||||||||| Sbjct 90294 TCCGCTATTCTCCA 90307 >seq5 Length=514667 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/75 (87%), Gaps = 3/75 (4%) Strand=Plus/Plus Query 4931 GGGCGAATAGCTCAGC-GGT--AGAGCTACTCGTTTACACCGAGTCGGTCGGGGGTTCGA 4987 |||||| ||||||||| ||| ||||| ||||||||||||||| |||||||||||||| Sbjct 79456 GGGCGATTAGCTCAGCTGGTTCAGAGCACCTCGTTTACACCGAGGGGGTCGGGGGTTCGA 79515 Query 4988 TCCCCTCTTCGCCCA 5002 |||||| ||||||| Sbjct 79516 ACCCCTCATCGCCCA 79530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549530461913040