Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_021774.1 Length=29742 Score E Sequences producing significant alignments: (Bits) Value seq12163 131 3e-26 seq3006 105 1e-18 seq3418 95.1 2e-15 seq1269 93.3 8e-15 >seq12163 Length=619 Score = 131 bits (144), Expect = 3e-26 Identities = 379/577 (66%), Gaps = 28/577 (5%) Strand=Plus/Plus Query 1592 GCAAAGTCCATGCCTTTCCACTGGTGACGCTCCAGCATGCGAAACTTGCCACCCGAAACC 1651 || ||||||||||| || |||||||||||||||||| ||| ||||||||||| | || Sbjct 7 GCGAAGTCCATGCCCTTGAACTGGTGACGCTCCAGCACGCGGAACTTGCCACCGGGCACT 66 Query 1652 ACCGGCGGCGCGAGTACGACACATCCGGCACTGTCGCCAGTGTGGGACGGGTCGTAGCCA 1711 |||||||| | | || ||||| |||||||| || | || ||||||||| ||| Sbjct 67 TGGGGCGGCGCCACAATCACGATGCCGGCGCTGTCGCCCGTCTCGGCCGGGTCGTACCCA 126 Query 1712 ATCCAGACCGGGCGCGAGCCGAACGGGTGGTCGGCGAACGGGGCGAA---GTCCTCCCA- 1767 ||||| |||| ||| ||| | ||| | |||||| ||| ||| | | |||| Sbjct 127 ATCCACACCGCGCGGTCGCCATATGGGCGCATGGCGAAGGGGCTGAACTCGCCGGCCCAC 186 Query 1768 TGTTTCCATCACGTCGACCATGCAGCGCTGCAGC-TCCTCGAACGGGAATACCGATGCCT 1826 | ||| | ||| ||| ||| |||||||| || || | |||||| || || Sbjct 187 TCCACCCAGC-TGTCCACCTGGCACGGCTGCAGCATCGTC-AGCGGGAACACGCTGGCGC 244 Query 1827 TATCGTCGACAAACTCGCACATAAACAGGTTCTTAAAGTCCTCATCACTGTTTTCGCGTC 1886 | ||||| || ||||||||||| | |||||| || ||||| | |||| Sbjct 245 TGTCGTCCACGAACTCGCACATCAGCAGGTTGGCGAATTCCTCGGCGCTGT--------- 295 Query 1887 TGAGCTGGTCGAGGTCGAACAGGGTGCAGCCACCGGCAAGGGCGTCCTCAATAGTGACAA 1946 | | |||||||| ||| || | | | ||||| | ||||| | Sbjct 296 -------NNCCACATCGAACAGATCGCACCCTCGGTCGGCCGCGTCGAGCACTGTGACGA 348 Query 1947 TCTGCCGCCACTGTCCGTCAGCGCAAAGAAGCCCACCGGCGAGCGCGCTGTGACTGATGT 2006 |||||||||| |||| |||| | | |||| | | ||| || ||| |||| | Sbjct 349 TCTGCCGCCAGATAGCGTCCTCGCAGCGTCGGCCACTGCCCAGCCGGCCGTGGCTGACAT 408 Query 2007 CGATTTCGAT-GCGGTCAGCAGCACTGGCGCGCCCCTTGTTGAACAGCTCGCCAGACCAG 2065 ||| ||||| | | | || | ||| | ||||||||||| ||||||| | |||| Sbjct 409 CGA--TCGATACCTGCTGGGAGGTC-GGCTTG-CCCTTGTTGAAGCGCTCGCCTGTCCAG 464 Query 2066 AAGGGATAAGCGCCGTGCGCCAGCGTGGAAGGTGTCGAAAAGTAAGTTGAGCGCAGATGC 2125 || || || ||||||||| |||||||| || ||||| || |||| | | Sbjct 465 AAATCGTAGGCTTCGTGCGCCATGGTGGAAGGCGTGCTGAAGTAGGTCTTGCGCCATTTC 524 Query 2126 TTCTGCGAGGCCATGCCCGATGCGACTTTGCGCAGCT 2162 || ||| |||||||| ||||| ||| ||||| Sbjct 525 TTGTGCATCGCCATGCCGCTGGCGACCTTGTTCAGCT 561 >seq3006 Length=629 Score = 105 bits (116), Expect = 1e-18 Identities = 179/253 (71%), Gaps = 10/253 (4%) Strand=Plus/Plus Query 14712 GGCTGGCACAAAACCCTGTCTAACGTTGGTGTACAGGGCGTTACCGGCATCAGTGCCTCA 14771 |||||||| || | ||||| ||||| | ||| ||||| ||||||||||| || Sbjct 21 GGCTGGCATAAGTCGCTGTCCAACGTGGCCGTAGCCGGCGTGACCGGCATCAG--CCGGG 78 Query 14772 GTGTTC--TGGGATTTGCAGGCATCCGGC-ACCGATGCTGACCTGCTCAACAAGGCCGGG 14828 || | ||||| |||||| ||||||| ||||| || | | ||||||| |||| Sbjct 79 ACGTCCATTGGGACCTGCAGG-ATCCGGCGACCGACGCCGGCATGCTCAATGCCGCCGAT 137 Query 14829 GTTACGACGCTGGT--ACGCAAGGACGGTTTCCGTTTCTGGGGTAACCGCACCTGCTCAG 14886 | || |||||| | || | | |||| | | |||||||| ||||||||| | Sbjct 138 ATCACCACGCTGATCAACTCCA--ACGGGTACAAGTTCTGGGGATCGCGCACCTGCAGCG 195 Query 14887 ATGACCCGCTTTTTCTGTTTGAGAACTACACCCGTACCGCGCAGGTACTGGCCGACACGA 14946 |||| ||||| ||| || |||| || |||||| || |||||| | ||||||||||| | Sbjct 196 ATGAGCCGCTGTTTGCCTTCGAGACCTCCACCCGCACGGCGCAGATCCTGGCCGACACCA 255 Query 14947 TGGCTGAAGCGCA 14959 | || || ||||| Sbjct 256 TCGCCGAGGCGCA 268 >seq3418 Length=506 Score = 95.1 bits (104), Expect = 2e-15 Identities = 274/415 (66%), Gaps = 20/415 (5%) Strand=Plus/Minus Query 306 AGCTGGAACGGTACGCGGTGCGCATCCATCAGGTCGGCGGCGC-TGGCTTTTTTGATGTT 364 ||||| ||| ||||| |||| ||| || |||| || ||| | | |||||||| Sbjct 481 AGCTGCGGCGGCACGCGCAGCGCCGCCAGCATGTCGTCG-CGCGTCACGCCCTTGATGTT 423 Query 365 GAAAAAGTCATCCTTTGTGGCGACCTCGCTCAATGGCACGATTTTTATGCCGTCCGGTTT 424 | || |||||||| | || |||||||||| || | ||| | | ||||| || Sbjct 422 GGCGAACTCATCCTTGGCCGCCACCTCGCTCACCGGGATGATCTGCAGACCGTCTTTCTT 363 Query 425 CCCGTTCGGTGAGTAGAAAAACAGGTTTTTAAAGTTGCCGAGCCCTTTAGAGTTACGCAT 484 ||||| || || | | |||||||| |||||||| | || || ||| | Sbjct 362 GCCGTTGGGCGAATGCACGAACAGGTTCCGGAAGTTGCCCGGACCAC----GTGCCGCCT 307 Query 485 TG----CATCGCGCAG--CGATTCGACGTCAGTCGCGCTTTGCGCCGGG---TCAGTCAC 535 || | |||||||| || || ||||| | || || |||| || || |||| Sbjct 306 TGAGCGCCTCGCGCAGGCCGGTT--ACGTCGGACGA---TTCCGCCTGGGAATCGGTCAG 252 Query 536 ATACATGATGTAACCTGCGTGCGCGCCGTTCTGGTAATACTTGCGGCGGAACAGCGTCGC 595 || | |||| | || ||||||| |||||| | ||| |||||||| ||||||||||| || Sbjct 251 GTAGAGGATGAAGCCGGCGTGCGAGCCGTTGTTGTAGTACTTGCGCCGGAACAGCGTGGC 192 Query 596 GGATTCATTCAGCCAGGCGGAATTAAGTGCGCTGAGATATTCAGGCAGGCCGTAAATCTC 655 || || || ||| |||| | | || | | || ||||||||||| | ||| Sbjct 191 CGACTCGTTGAGCAGCGCGGCCTGCACGGCCGGCATCCACTCGGGCAGGCCGTACACCTC 132 Query 656 CTGATTAATATCAGGCTCCAGCAGGTGGAACACGGTATCGGGTGCGAATTCATGC 710 ||| | ||| | |||| |||| ||| |||| ||| | |||||||||| Sbjct 131 CTGGTCTGCATCGGACTCCCGCAGCTGGTACACCTGCCCGGCCGGGAATTCATGC 77 >seq1269 Length=1066 Score = 93.3 bits (102), Expect = 8e-15 Identities = 168/238 (71%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 2599 GTTACGGTTGGCAACGTTGGGGTTAAGGTCGGCCTCGTTGCCGGTCTGGCTG-TAGCGGT 2657 ||| |||||||| || ||||| ||||| |||||||||||| | ||| || || | Sbjct 16 GTTGCGGTTGGCGACCGCTGGGTTCAGGTCCGCCTCGTTGCCGC-CGCCCTGGTAACGCT 74 Query 2658 TGACGCGCGCCAGTCGCTCAATCTGCCGCCCGAGCAGGTCAATCTCTTTGAAGTCGCCGC 2717 || ||| ||| | ||||| | |||||| |||||||| ||||||||||||||||||| Sbjct 75 GGATGCGGGCCTGCCGCTCCAGCTGCCGATGCAGCAGGTCGATCTCTTTGAAGTCGCCGC 134 Query 2718 CTGACTTTTGCGGCTTGGCGATGAGCTGAATCAGGCGCGCCT-CAAGGCTGCTTTCGACA 2776 | | ||| |||| ||| || || ||||||| |||||| || | ||| Sbjct 135 CGGTCTTACCTTCCTTGTGGATCAGGATGGCCAACCGCGCCTCCAAGGC-GCCGCCAACA 193 Query 2777 CGGGAAATCGGT-GCGATGCCGTCCCAGCCGTCGCGCTGTTTCCAGCTTTGCACGGTC 2833 || | |||| || || |||||| |||||||| |||||||| || |||||| Sbjct 194 CGCTCCA-CGGTATCGGCGCGGTCCCATTCGTCGCGCGCCTTCCAGCTGTGGACGGTC 250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95037695040736