Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_021781.2 Length=135281 Score E Sequences producing significant alignments: (Bits) Value seq3818 125 6e-24 >seq3818 Length=586 Score = 125 bits (138), Expect = 6e-24 Identities = 329/494 (67%), Gaps = 6/494 (1%) Strand=Plus/Plus Query 99961 CAGTCATCTATCTTAGAGGGTATTAATTTCTACAGCGGTTTTGCTTACTTCTACAACCTC 100020 ||||| || ||| | || || || || ||||| ||| || || | ||||||||||| Sbjct 94 CAGTCGTCGATCCTGGAAGGCATCAACTTCTATTCCGGCTTCGCGTTTTTCTACAACCTG 153 Query 100021 GTTCGTCAAAACAAGATGACGGGGACAGGTAAAATCATTAGCTTCATTAATCGTGATGAA 100080 || || || ||| ||||| || || || || ||||| |||||||| || || || ||| Sbjct 154 GTCCGCCAGAACCGCATGACCGGCACCGGCAAGATCATCAGCTTCATCAACCGCGACGAA 213 Query 100081 TTAGCCCATTCGAAATTTATTTCTGAGCTAATTAGAGCTATTGTAGGGGAAAACCCTGAA 100140 | ||||| | || || || || || || | || || | || || |||| | Sbjct 214 CTGGCCCACACCAAGTTCATCAGCGAACTGATCCGCGCCATCATCGGCGAGAACCAGCAG 273 Query 100141 CTACAAACAGATGAACTAAATGACTACGTGTACGCTTCTTTTAGACATGCCGTAGAGCTA 100200 || || || | || | | |||||| ||| | | || |||||| | | ||| Sbjct 274 CTTCAGGGCGACCAGCTCACCGCTTACGTGCACGATGCATTCGAGCATGCCATCGCGCTG 333 Query 100201 GAACAAGCG-TGGTCTAGTGAGGTACTACAAGGCATTGAAGGAATTGATGTGGAAGAAAT 100259 ||| | ||| ||| | | ||||| || | ||||| || || || || ||||| || || Sbjct 334 GAA-ACGCGCTGGACCGGCGAGGTGCTGGACGGCATCGACGGCATCGACGTGGACGAGAT 392 Query 100260 GTTAGACTATGTAAAATATCGTGCTAATAAAATGTTAGGGATGTTAGGTCTTCAACCA-A 100318 | | ||| || || || || || || || ||| || ||| | || | || | | Sbjct 393 GATCCGCTACGTGAAGTACCGCGCCAACAAGATGGCCGGCATGCTCGG-CATCGAGAAGC 451 Query 100319 TGTATCAAGGTCA-CACAGAAAATTCTATGACATGGATTAAAGCTTACGCCGATAACTTT 100377 |||| || | || || | || ||| | ||||| || || || ||||| || || Sbjct 452 TGTA-CAGCGACACCAACGTCAACGTGATGCCGTGGATCAAGGCCTATGCCGACAATTTC 510 Query 100378 ACAGAAACAAAAACCGACTTTTTCGAAATGCGTAATTCTAGTTACAAGAAAACAAATTTA 100437 || || || || |||||||| ||||| ||||| || | ||||||||||| || |||| Sbjct 511 ACCGAGACCAAGACCGACTTCTTCGAGATGCGCAACGCCAGTTACAAGAAGACCAATTCG 570 Query 100438 GACAATGGGTTCGA 100451 ||||| || ||||| Sbjct 571 GACAACGGCTTCGA 584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432703817470684