Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_021857.1 Length=41475 Score E Sequences producing significant alignments: (Bits) Value seq8080 125 2e-24 seq5569 116 1e-21 seq7676 89.7 1e-13 >seq8080 Length=420 Score = 125 bits (138), Expect = 2e-24 Identities = 161/217 (74%), Gaps = 10/217 (5%) Strand=Plus/Plus Query 37253 CGTACGCAAAAATTATTG--TATCGTGTTAAGAGTGGTTACTTCGCCACACAGCTTAAAC 37310 |||||| ||||| |||| ||| |||||||||||||||||||| |||||||||||||| Sbjct 206 CGTACGTAAAAA--ATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAAC 263 Query 37311 CCGCCGTCGAGCGGGTTTTGTC-GTTTCTGGGGCTGGGGATTCGTTGGTCCTGGTCTATT 37369 |||||||||||| |||||| | ||| || | || | ||| | || | || || Sbjct 264 CCGCCGTCGAGCTGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGAT--AACTCAATA 321 Query 37370 CCGCAGTTATCCATTGGTTCGGCTTCTTTGACGTTTCCGCTTCTAATTTGCTGTACATGA 37429 || |||||| || || || | ||| | ||||||| |||| ||||| ||| | Sbjct 322 CCTGAGTTATTCACTGACTCCGAGTCTGTTACGTTTCTGCTT---TTTTGCGATACGTTG 378 Query 37430 TGTTCCCTCAATTTGCACCTGCTGTATCAGCGAGGTG 37466 | |||||||||||| |||| ||| | || |||||||| Sbjct 379 TATTCCCTCAATTTACACCCGCTTTGTCTGCGAGGTG 415 >seq5569 Length=2135 Score = 116 bits (128), Expect = 1e-21 Identities = 137/182 (75%), Gaps = 5/182 (3%) Strand=Plus/Minus Query 39275 GGCATCCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAG 39334 |||| |||||| | |||||||| | |||||||||||||||||| ||||||||||||||| Sbjct 560 GGCACCCATTCTGTTTTCAGACTGCGGAAGAAGCGTTCCATTGGACTGTTATCCCAGCAG 501 Query 39335 TTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCCGGAACTG 39394 ||||| || ||||| | ||| || | ||| ||| ||||| | || | | | | Sbjct 500 TTTCCCCGTCGGCTGACACTTTGCTTTATCCTGTAACGCCA-GAGAAGTTGTTGATATTT 442 Query 39395 CCTGCTCGTATAATGACTGCCCTGATCGCTGTGGAACATCAC--CCCGCCGGGCTTACCA 39452 | | ||||| ||||| ||||| ||||| |||||||| || ||||| |||| |||| Sbjct 441 CAGTCCTGTATATTGACTTCCCTGGTCGCTATGGAACATGACGTCCCGC--GGCTGACCA 384 Query 39453 CG 39454 || Sbjct 383 CG 382 >seq7676 Length=607 Score = 89.7 bits (98), Expect = 1e-13 Identities = 51/52 (98%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 24835 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTAAA 24886 ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 49 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132577328622508