Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq32 210 3e-48 seq915 145 9e-29 seq1758 131 2e-24 seq1306 125 9e-23 seq1625 89.7 6e-12 >seq32 Length=13759 Score = 210 bits (232), Expect = 3e-48 Identities = 229/304 (75%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 |||||||| ||||| || |||||||| || || ||||||||||| || || |||||||| Sbjct 4169 TGGTCGACATAGCGGGCAGTGTCGTTGAACACACGGAGCATGGGGACTAGACCGTTGGAG 4228 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 |||||||||||| | ||||| || ||| || || | ||||||| | |||| ||| Sbjct 4229 GTGCCGTTGGTGCCGCGGATGTAGGAGCGGGCAGCACGGATCTTGTGCACAGCAATGCCA 4288 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 ||||| || || |||||||||||||| || || || ||||| ||||||||||| |||||| Sbjct 4289 ATGCCTCCAGCAGACTTGGAGATGAGAGCACATTGCTTGAGTGTGTCGTAGATACCCTCG 4348 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 || |||||| ||||||| | ||||| ||||| || || | || || | | ||||| Sbjct 4349 ATGGAGTCGTCCTTCATTTGGACGAGGAAGCAGGAGGACATCTGGGGATAGGGGGTGCCA 4408 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGTG 1630365 || ||||| || ||||| || || ||||| | | | |||| | || ||||||| Sbjct 4409 GCATTGAACAGGGTGGGAGTGGCATGAGTGAAGTATCTCTGTGACAAGAGGTGGTAGGTG 4468 Query 1630366 GCGA 1630369 ||| Sbjct 4469 CCGA 4472 Score = 111 bits (122), Expect = 2e-18 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 1628465 TCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGA 1628524 |||| || || || || | ||| || || || |||||||||||||||||||||| || Sbjct 4032 TCCAGAGGGCATAGAACAAGTCACGAGCACGCATCTCCTCCTTGCCGTGGTTCTTGCGGA 4091 Query 1628525 GGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 1628584 ||||||| | || | | |||||||||||| ||||| |||||| ||||| || |||| Sbjct 4092 GGTCGAGGAACTCAAAGACGTCGGCGTGCCATGGCTCGAGGTAGACTGCAAATGCACCCT 4151 Query 1628585 TGCGCTTGCCGCCGCC 1628600 ||||||| ||||| || Sbjct 4152 TGCGCTTTCCGCCACC 4167 Score = 95.1 bits (104), Expect = 1e-13 Identities = 332/508 (65%), Gaps = 24/508 (5%) Strand=Plus/Plus Query 1626982 TGGTCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCCG 1627041 || ||||| || || |||||||| ||||| |||| | || | || |||||||||||| Sbjct 2747 TGATCGACAGTGAATTGGATGGCATCGGCAGCGGCACGAGTTCTCAAATAGTACATGCCA 2806 Query 1627042 GTCTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGCGCTCGGGC--GTCG 1627099 ||||| || || ||| |||||| |||||| || |||| ||| || || | Sbjct 2807 GTCTTAAGACCCTTCTTCCATGCGTAGAAGTGCATTGAGGTGA---GCTTGGCAAAGTTG 2863 Query 1627100 CG-TCGGCGCAGTACAG--GTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGG 1627156 | ||||| | || || ||||| ||||| || |||| ||| | ||||||| Sbjct 2864 GGCTCGGC--AATAAAGACGTTGAATGACTGTGATTGATCGATGAAGGCACCACGATCGG 2921 Query 1627157 CCGCCATGTCGATGGTGACCCGGTTGG-GCACCTCCCACACGGTCTTGAAGATGGCCTTG 1627215 | |||||||| ||| ||| |||| | | |||||| || |||||| | | |||| Sbjct 2922 CAGCCATGTCAATGA-GACTACGTTGACGGATCTCCCAGACAGTCTTGTACAACTCCTTC 2980 Query 1627216 AGGTCGGGCGGCA--CCTCGTCGTCGCCAAAGCCCTGCACCGAGCCGTGCGCCGCGACGA 1627273 | ||| || | ||| || | | ||| | || || | |||| || Sbjct 2981 AAGTCCTCGGGGATGCCTGGT--------ACGTTCTGGATGGAACCACGGTTGGCGATGA 3032 Query 1627274 GCCTGTCGCGAAAGTCGGGCGTCCACAGGCCGCGCGCCATCAGGCGCTTGACCAGGTGGC 1627333 || | || || ||||||| ||| | ||||| || | || || Sbjct 3033 TGTGGTTCTTCATCTCTGGGGTCCACAAGCCAAGGGCCATGAGATCGGCAAGCAACTGCT 3092 Query 1627334 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTG-ATG 1627392 |||||| ||||| || || || | | ||| || || | |||||||||| |||| ||| Sbjct 3093 TGTTGACGACGGTGAACTCTCCAGCCAACACACGACGAGAGTAGATGTTGGAGGTGTATG 3152 Query 1627393 ACCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCC 1627452 | ||| | |||| ||||||| ||||||||||| || | ||| ||||||||| | || Sbjct 3153 GC-TCGAAGCACTCGTTGTTGCCGAGGATCTGCGAGGTTGAGGCAGTGGGCATGGGGGCA 3211 Query 1627453 ACGAGGAGCGAGTTGCGCAGGCCGTGCT 1627480 | ||| | |||||||| || |||| || Sbjct 3212 ATGAGCAAGGAGTTGCGGAGACCGTTCT 3239 >seq915 Length=13476 Score = 145 bits (160), Expect = 9e-29 Identities = 223/317 (70%), Gaps = 1/317 (0%) Strand=Plus/Minus Query 868693 CTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAA 868752 ||| ||||| ||| || || |||||||||||||||||||| ||||||||||| Sbjct 578 CTTTGCGTAATCGGAGACACGGTTCTCGAAAAAGTTGGTCTTGCGAATGAGCGAGATCAT 519 Query 868753 CTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAG 868812 ||||||||| ||| ||||||| | |||||| ||| | | ||||||| | ||| Sbjct 518 CTCCATCCAGTCGAATGGGTTGGTAGAGTTGTAGATCTTCTTGTATCCGAGGGCAAGGAG 459 Query 868813 CAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAG 868872 || || ||||| ||||||||||||||| ||||| || ||||||||| ||||| Sbjct 458 GAGACGATCGGCACAAAACTCGATGTACTGTGACATGGAGCGACTGTTCATGCCAATGAG 399 Query 868873 CGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGAT 868932 | || || || || | | | | |||||| ||||| ||| || || ||| ||||| Sbjct 398 ATCGACAGGGAGTGATTGGGTGATAAACTCCTTCTCACACTCTACAGCATCGCGAATGAT 339 Query 868933 CTGCCTGGGCACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGCAAA 868992 | | | || ||| | | |||||| ||| | ||||||||| |||||||| Sbjct 338 GGACTCGAGAGTGTTGGCATCGAGACGGTTGACAAGCTTGCTGTAGAGCAAACAGGCAAA 279 Query 868993 GTCGCAGTGCA-ACCCT 869008 ||| ||||| | ||||| Sbjct 278 GTCACAGTGAAGACCCT 262 Score = 116 bits (128), Expect = 5e-20 Identities = 158/219 (72%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| |||||||| | ||||| || | | |||||||| | ||| ||||| Sbjct 266 ACCCTCGTCACGACTGATGAGCTCGTTAGAGAATGTCAATCCGGGCATCAAGCCACGCTT 207 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||||||||||| |||||| || || ||||||||| ||||| || || ||||| Sbjct 206 CTTGAGCCAAAAGATGGAGCAGAAGCTACCACTGAAAAAGATACCCTCTACAGCTGCAAA 147 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 | ||| | ||||| ||||| || | || ||| | ||||| |||| ||||| Sbjct 146 GGCGACCAAACGCTCAGCAAA--TGACTTGG----AGTTGGTAATCCATCTCATAGCCCA 93 Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGC 869397 || ||||| ||| | || | || | || |||||||| Sbjct 92 CTCAGCCTTCTTCTTTACACATGGAATGGTCTCGATGGC 54 >seq1758 Length=7412 Score = 131 bits (144), Expect = 2e-24 Identities = 214/301 (71%), Gaps = 8/301 (3%) Strand=Plus/Plus Query 1573967 CGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGTCGTGCGCAAGAT 1574026 |||||| || ||| || || || |||||||| ||| ||||||| |||||| | | Sbjct 6628 CGAGGCTGTCTACGAGCTGAATGCCTCGGACGACCGCACGCTCGACGTGGTGCGCGACAA 6687 Query 1574027 CATCAAGCACCACGCCTCCAAGAGGATCGAC-CTGCCGCCCGGACGCCACAAGGTGATCA 1574085 |||||| ||| ||| | | ||| ||||| |||||||| |||||| | |||| Sbjct 6688 GATCAAGACGTTCGCAAAGCAGAAGGT-GACACTGCCACCCGGACGACACAAGATCATCA 6746 Query 1574086 TCCTCGACGAGGCCGACTGC-CTCACGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCATG 1574144 ||||||| |||||||| ||| | ||||||| || |||||||| || || || |||| Sbjct 6747 TCCTCGATGAGGCCGA-TGCAATGACGTCGGGCGCACAGCAGGCGCTTCGTCGCATCATG 6805 Query 1574145 GAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCGTCGATGGTCATC 1574204 || | ||| | || || || || || ||||| |||||||||||| | | | ||||| Sbjct 6806 GAGATACACTCGGCAACCACCCGTTTCGCACTGGCCTGCAACACGTCGACCAAGATCATC 6865 Query 1574205 GAGGCCCTCCAAAGTCGC--TGCGCCATTCTGCGCTTTGTGCGCCTGGGTGACGCCCAGA 1574262 ||| || | | |||||| ||||| | |||||||| ||| || ||||| |||| Sbjct 6866 GAGCCCATTC--AGTCGCGGTGCGCAGTGCTGCGCTTCACGCGACTCTCGGACGCACAGA 6923 Query 1574263 T 1574263 | Sbjct 6924 T 6924 >seq1306 Length=10203 Score = 125 bits (138), Expect = 9e-23 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1592099 AAGGACCAGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAG 1592158 ||||| ||||||| || || ||| | || |||||| ||||| ||| | ||||| Sbjct 7458 AAGGATGAGAAGCGTTTGGATGATATCCCACCCTGGGACCGTGAGTTCTGCAAGGTCGAT 7399 Query 1592159 CAGCCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTC 1592218 || || |||||||| ||| | ||| | || |||||||| | ||||||||||| || ||| Sbjct 7398 CAACCAACCCTCTTCGAGCTCATCTTGGCTGCCAACTATTTGGACATCAAGCCACTTCTC 7339 Query 1592219 GATCTTGGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGC 1592278 ||| || |||||| |||| ||||| |||||| || ||| | || |||||||| | Sbjct 7338 GATGTTACTTGCAAGACTGTCGCCAATATGATCCGTGGTAAGACACCAGAGGAGATTAGA 7279 Query 1592279 AAGACCTTTAACATCAAGTACG 1592300 |||| || ||||| ||| ||| Sbjct 7278 AAGATTTTCAACATTAAGAACG 7257 >seq1625 Length=8199 Score = 89.7 bits (98), Expect = 6e-12 Identities = 147/206 (71%), Gaps = 7/206 (3%) Strand=Plus/Minus Query 1850345 CACCGCGACCTCAAGTCGTCCAACCTGCTGGTGACCGACGAC-TACTCGGTCAAGGTGGC 1850403 || |||||| | ||||| |||||| |||| ||| ||| | |||||||||||| Sbjct 7952 CATCGCGACTTGAAGTCCCACAACCTCTTGGTCGACGA-GACATGGAAGGTCAAGGTGGC 7894 Query 1850404 CGACTTTGGCTTTGCGCGCA-TCAAGGAGGCCAACGCGACCATGACCCGGTGCGGCACGC 1850462 |||||||| | || | || || || |||| ||| |||||||| ||| ||||| | Sbjct 7893 TGACTTTGG-TCTGAGTACAATCGAGCAGGCTAAC---ACCATGACTGCGTGTGGCACAC 7838 Query 1850463 CCTGCTGGACGGCGCCCGAGGTTATTCGCGGCGCGCGCTACTCGGAAAAGGTCGACGTCT 1850522 | || ||||| || ||||| || | ||| | | | ||| | || |||| || |||| Sbjct 7837 CTTGTTGGACAGCACCCGAAGTGCTCCGCAACCAGAGATACACCGATAAGGCTGATGTCT 7778 Query 1850523 ACTCTTTCGGCGTCGTCATGTGGGAG 1850548 |||| |||| | | |||||||||||| Sbjct 7777 ACTCATTCGCCATTGTCATGTGGGAG 7752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106041010412094