Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_021867.1 Length=46978 Score E Sequences producing significant alignments: (Bits) Value seq93 484 2e-132 seq1237 172 2e-38 >seq93 Length=584700 Score = 484 bits (536), Expect = 2e-132 Identities = 411/505 (81%), Gaps = 1/505 (0%) Strand=Plus/Plus Query 35348 TTGCTCACTTTCACTTAGTAATGG-TATTTCTGCATTGTACGGATTCTTTGCTGGTGTTT 35406 |||||||||||||||||||||||| ||| |||||| | |||||| | ||||||||| ||| Sbjct 484959 TTGCTCACTTTCACTTAGTAATGGGTATCTCTGCACTTTACGGAATGTTTGCTGGTATTT 485018 Query 35407 ACCACTGGTTTCCAAAAATGTTCGGGCGTATGATGAATAAAAATTTAGGTTATATTCACT 35466 |||||||||| || ||||||| ||| || ||| | || |||||||||||||||||||||| Sbjct 485019 ACCACTGGTTCCCTAAAATGTACGGACGAATGCTAAACAAAAATTTAGGTTATATTCACT 485078 Query 35467 TTTGGATTACTGCAATTTGTGCTTATGGTGTTTTCTATCCAATGCACTTTATAGGGATGG 35526 ||||| |||| ||| ||||||||||||| ||||||| ||||||||||||||| || | | Sbjct 485079 TTTGGGTTACAGCAGTTTGTGCTTATGGAGTTTTCTTTCCAATGCACTTTATTGGATTAG 485138 Query 35527 CTGGATTACCACGTCGTTACTACACAAATACTAACTTTCCATTATTTGATGATTTAGCTG 35586 |||| |||||| | ||||| || ||||| || ||||| |||||||||||||||||| Sbjct 485139 CTGGTTTACCAAGACGTTATTATACAAACACAAACTTCCCATTATTTGATGATTTACAAA 485198 Query 35587 ATGTGAATAAAGTAATTACTACTTTTGCTTTGATTGGAGCAGCTTTCCAATTGGTATTTA 35646 |||||||| ||||||| ||||| ||| | | |||| ||||||||||| || ||| Sbjct 485199 ATGTGAATGTTTTAATTACAACTTTCGCTCTTGTAGGAGGTGCTTTCCAATTAGTGTTTT 485258 Query 35647 TGTGGAATTTCTTTACTAGTATTTTTTACGGaaaaaaaGCTGTGCAAAATCCATGGAGGT 35706 | | || ||||| | |||||||| ||||| || ||||| || ||||| ||||||| | Sbjct 485259 TATACAACTTCTTCAGCAGTATTTTCTACGGTAAGAAAGCAGTTCAAAACCCATGGAAAT 485318 Query 35707 CTAATACTCTTGAGTGGACTACACCAGTGGAACATGTACATGGAAACTGGCCAGGTGCTA 35766 ||| ||| | ||||||||||||||||| || ||| | || |||||||||||||| | | Sbjct 485319 CTACAACTTTAGAGTGGACTACACCAGTTGAGCATATTCACGGAAACTGGCCAGGAGAAA 485378 Query 35767 TCCCAGAAGTTTATAGATGGCCTTATGATTACAGTAAACCAGGGCATGACGAAGATTTTG 35826 | || | || || |||||||| ||||| |||||||| ||| ||||| | |||||||| Sbjct 485379 TTCCTCACGTATACAGATGGCCGTATGACTACAGTAACCCAAATCATGATGTAGATTTTG 485438 Query 35827 TTCCTCAAACTGTGCCAATGAAAGA 35851 ||||||||| ||| ||||||||||| Sbjct 485439 TTCCTCAAAATGTACCAATGAAAGA 485463 Score = 356 bits (394), Expect = 7e-94 Identities = 360/465 (77%), Gaps = 4/465 (1%) Strand=Plus/Plus Query 39897 CACAATACATCTGTAAAATAAAATTCTGCGTAAGCTATTTGCCATAACAGAAAATTACTA 39956 ||||| |||| |||||||| ||||| || || || || ||||||| ||| |||||||| Sbjct 549118 CACAAGACATTAGTAAAATACAATTCGGCATAGGCGATCTGCCATAGCAGGAAATTACTT 549177 Query 39957 ATGCGGTGTTCGCCACTTGTTCTTATTACTAAATCTACATCAGGTAGATTATGCGTGTAA 40016 || | ||||| |||||||||| ||||| ||||||||| ||||||| ||| ||||||||| Sbjct 549178 ATTCTATGTTCTCCACTTGTTCGTATTAATAAATCTACGTCAGGTAAATTTTGCGTGTAA 549237 Query 40017 AGATGCTTATTTAATATTGAATCGTCAATAGAATCTATTGAAATTATATTATTTTTAACT 40076 ||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||| Sbjct 549238 AGATGCTCATTTATAATTGAATCGTCAATAGTGTCTATTGAAATTATATTATTTTTAACT 549297 Query 40077 TTATCACTAATTATTTTAACAGCATTTATGATTTCTTCTCTCGATCCGTAGCTTAATGCT 40136 ||||| || ||| | | || || |||| | ||| ||||| || ||||| ||||| || Sbjct 549298 TTATCGCTGATTGCTCTGACGGCGTTTACCAATTCCTCTCTAGAACCGTAACTTAAAGCA 549357 Query 40137 AAGGTAAGGGTCATTCTGGTATTGTTTTTTGTTTGCGCTATTACTTCGAGCAATTCTTTT 40196 | || ||||| | ||| ||||||||||| |||| | || || || | | ||| ||| Sbjct 549358 AGAGTTAGGGTTAGTCTTGTATTGTTTTTGGTTTTTTCAATAACATCTAAAAGTTCCTTT 549417 Query 40197 TGAACTGATTTTGGTAAATTATCAAGGTTTCCTATCGAATTTAACTTTATGTTGTTTTTT 40256 || | ||||||||| || ||||| ||||| || | ||| | | || | | |||| Sbjct 549418 TGTGCACTTTTTGGTAATTTCTCAAGATTTCCAATTGCATTAAGTCTGATAT--TATTTT 549475 Query 40257 ACT-AAG-GTTGCTAAttttttttttAAGGAATTAATTAGTATTTTCATTAACAAATCGA 40314 || ||| || | | | ||||||||| ||||| || | ||||||||||||| |||| Sbjct 549476 CCTGAAGTGTAACCAGCTCTTTTTTTAAAGAATTGATCAATATTTTCATTAACGCTTCGA 549535 Query 40315 CTTCTAATTTTGGACGGTTCCAATTTTCGGTCGAAAAATTATATA 40359 |||| | ||||||||| ||||| ||||| || |||||| ||||| Sbjct 549536 CTTCCAGTTTTGGACGATTCCAGTTTTCTGTAGAAAAAGCATATA 549580 >seq1237 Length=148939 Score = 172 bits (190), Expect = 2e-38 Identities = 348/508 (69%), Gaps = 15/508 (3%) Strand=Plus/Minus Query 35343 TGTGGTTGCTCACTTTCACTTAGTAATGGTATTTCTG--CATTGTACGGATTCTTTGCTG 35400 ||| || || ||||| ||| | || |||| || | |||| | | || ||| || | Sbjct 92936 TGTAGTAGCCCACTTCCACCTGGTTATGGGATCGGCGGCCATTTTTGGTATGCTT-GCAG 92878 Query 35401 GTGTTTACCACTGGTTTCCAAAAATGTTCGGGCGTATGATGAATAAAAATTTAGGTTATA 35460 | ||||| |||||||| || |||||||| || | |||||||| | || || | |||| Sbjct 92877 GGGTTTATCACTGGTTCCCTAAAATGTTTGGCAGAATGATGAACGATAAATTGGCTTATC 92818 Query 35461 TTCACTTTTGGATTACTGCAATTTGTGCTTA--TGGTGTTTTCTATCCAATGCACTTTAT 35518 |||| || ||| | ||| | |||||||| |||| |||| || |||||||| | Sbjct 92817 TTCATTTCTGGGTAACTTTTGTATGTGCTTACCTGGTATTTTTC--CCGCTGCACTTTTT 92760 Query 35519 AGGGATGGCTGGATTACCACGTCGTTACTACACAAATACTAACTTTCCATTATTTGATGA 35578 ||| ||| || |||||||||||||||| || |||| | ||| || | || | Sbjct 92759 AGGTCTGGACGGTGTACCACGTCGTTACTATGCATTTACTGAATTTGAGTT-TATGCAAA 92701 Query 35579 TTTAGCTGATGTGAATAAA-GTAATTACTACTTTTGCTTTGATTGGAGCAGCTTTC---C 35634 | | | | | |||| || || ||| | || || | |||||| | | Sbjct 92700 AATGGGTTAC---AGTAAACGTTTTTGTTACCTGGGCAGCAATCGTTGCAGCTCTAGCAC 92644 Query 35635 AATTGGTATTTATGTGGAATTTCTTTACTAGTATTTTTTACGGaaaaaaaGCTGTGCAAA 35694 || ||| || ||| || || || | ||||||| | || |||||||| |||| Sbjct 92643 AAGTGGCTTTCCTGTTTAACTTTTTCTATTCTATTTTTAAAGGTAAAAAAGCGCCACAAA 92584 Query 35695 ATCCATGGAGGTCTAATACTCTTGAGTGGACTACACCAGTGGAACATGTACATGGAAACT 35754 | || ||| || || || | |||||||||||||| ||||||||| | |||||||||| Sbjct 92583 ACCCTTGGGAATCCAACACATTGGAGTGGACTACACCTGTGGAACATCTGCATGGAAACT 92524 Query 35755 GGCCAGGTGCTATCCCAGAAGTTTATAGATGGCCTTATGATTACAGTAAACCAGGGCATG 35814 |||| |||| || ||| ||| || | ||||| ||||||||||| ||||| || || Sbjct 92523 GGCCTGGTGAAATTCCAACAGTATACCGTTGGCCATATGATTACAGCAAACCTGGAGCTG 92464 Query 35815 ACGAAGATTTTGTTCCTCAAACTGTGCC 35842 | |||||||| ||||||| || ||||| Sbjct 92463 AAGAAGATTTCATTCCTCAGACAGTGCC 92436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150184130258960