Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq444 129 5e-25 seq60 116 3e-21 seq32 116 3e-21 seq1158 113 4e-20 seq974 105 6e-18 >seq444 Length=38654 Score = 129 bits (142), Expect = 5e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||| |||||| ||||||| || || || || |||||||| | || || || | Sbjct 4814 ACAATGCAAATCTTTGTTAAAACTCTGACAGGCAAGACTATTACCTTGGAGGTCGAGGGT 4873 Query 24761 ACCGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGA 24819 |||| || | || |||| || || || |||||||||||| || ||||| || || || Sbjct 4874 TCCGATACTATCGAGAACGTCAAGACCAA-GATCCAAGACAAGGAGGGAATTCCACCTGA 4932 Query 24820 TCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTA 24879 ||||||||| | ||||||||||| || || || |||||| | | | || ||||| Sbjct 4933 CCAACAACGTCTCATCTTTGCCGGCAAGCAACTTGAGGATGGTCGTACTCTCTCCGATTA 4992 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| |||||||| || || || |||||||| Sbjct 4993 CAACATCCAAAAGGAGTCCACTCTTCACTTGGT 5025 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || ||||| || || || || || || |||| || Sbjct 5273 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACCATCACCCTTGAGGTCGAAGGTTCC 5332 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || |||| || || || |||||||||||| || || || || || || || Sbjct 5333 GATACTATCGAGAACGTCAAGACCAA-GATCCAAGACAAGGAGGGTATCCCACCTGACCA 5391 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||||| | ||||||||||| || || || |||||| | | | || ||||| || Sbjct 5392 ACAACGTCTCATCTTTGCCGGCAAGCAACTTGAGGATGGTCGTACTCTCTCCGATTACAA 5451 Query 24883 CATTCAAAAGGAATCGACACTACA 24906 ||| |||||||| || || || || Sbjct 5452 CATCCAAAAGGAGTCCACCCTCCA 5475 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| |||| || || || ||||| || || || || || || || | | Sbjct 5045 ATGCAAATCTTCGTTAAGACCCTCACTGGTAAGACCATCACTCTTGAGGTCGAGGGTTCT 5104 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| ||||| || || || || ||| Sbjct 5105 GACACCATTGAGAATGTCAAGACCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAA 5164 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | ||||| || || || ||||| |||||| | | | || || || ||| Sbjct 5165 CAACGTCTCATCTTCGCTGGTAAGCAGCTCGAGGATGGTCGTACTCTTTCTGACTACAAC 5224 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 || |||||||| || || || || Sbjct 5225 ATCCAAAAGGAGTCCACTCTCCA 5247 >seq60 Length=27343 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| |||| || | || || || || || || ||||| || || | | Sbjct 11744 ACCATGCAGATCTTCGTTAAGACATTGACAGGAAAGACCATCACACTCGAGGTCGAGGGC 11685 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || |||||||||||||| || || || || ||||| Sbjct 11684 TCTGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCCGAC 11625 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 ||||||||| | ||||| ||||| || || || |||||| | | | | || || || Sbjct 11624 CAACAACGTCTTATCTTCGCCGGTAAGCAACTTGAGGATGGTCGCACCCTTTCGGACTAC 11565 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| |||||||| || || || |||||||| Sbjct 11564 AACATCCAAAAGGAGTCAACCCTCCACTTGGT 11533 >seq32 Length=13759 Score = 116 bits (128), Expect = 3e-21 Identities = 296/440 (67%), Gaps = 13/440 (3%) Strand=Plus/Plus Query 139492 AGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGT 139551 ||||| ||||| ||||| ||||||||||| || || |||| || | ||| || || || Sbjct 4097 AGGAACTCAAAGACGTCGGCGTGCCATGGCTCGAGGTAGACTGCAAATGCACCCTTGCGC 4156 Query 139552 TT---GCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCC 139608 || ||||||||| ||||| | || ||| | ||||| || || | ||| || | Sbjct 4157 TTTCCGCCACCTTGGTCGACATAGCGGGCAGTGTCGTTGAACACACGGAGCATGGGGACT 4216 Query 139609 AGACCGCTCGCTGTTCCGTTGGTGCTACGGATG--GGACTGTTGCGAGCTCGGACGTCAT 139666 |||||| | | || |||||||||| |||||| ||| | | ||| |||| | | Sbjct 4217 AGACCGTTGGAGGTGCCGTTGGTGCCGCGGATGTAGGA--GCGGGCAGCACGGATCTTGT 4274 Query 139667 GTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGT-AATGTC 139725 | ||| ||||| || || || || | ||||| || | | | | || || | | ||| Sbjct 4275 GCACAGCAATGCCAATGCCTCCAGCAGACTTGGAGATGAGAGCAC-ATTGCTTGAGTGTG 4333 Query 139726 TCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGC 139785 ||||| ||||| ||| |||||||| ||| ||| || ||||| || || | || Sbjct 4334 TCGTAGATACCCTCGATGGAGTCGTCCTTCATTTGGACGAGGAAGCAGGAGGACATCTGG 4393 Query 139786 GG-TAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAA-CATTTGTTTCG 139843 || ||| ||||| || ||||| || ||| | || || ||||| || | | | | Sbjct 4394 GGATAG-GGGGTGCCAGCATTGAACAGGGTGGGAGTGGCATGAGTGAAGTATCTCTGT-G 4451 Query 139844 ACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGA 139903 ||| | | ||| || ||||||| | |||| || ||||||||||| | || | Sbjct 4452 ACAAGAGGTGGTAGGTGCCGATGGCAGCCTCAATGTCGTCGCCGTGGATACCAAGGGACA 4511 Query 139904 CTCGCATCAGCATATGTTGG 139923 | ||||||| | |||||| Sbjct 4512 CACGCATCAAGAGGTGTTGG 4531 >seq1158 Length=25781 Score = 113 bits (124), Expect = 4e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || ||||| || ||||| | || || || | || Sbjct 9479 ATGCAGATTTTCGTCAAGACCCTCACTGGTAAGACAATTACCTTGGAGGTCGAGGGTTCC 9420 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || |||| || || || ||| ||||| || || || || || |||||||| Sbjct 9419 GATACCATCGAGAACGTCAAGACCAA-GATTCAAGATAAGGAGGGTATCCCACCCGATCA 9361 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||||| | ||||| ||||| || || || |||||| | | | || ||||| || Sbjct 9360 ACAACGTCTCATCTTCGCCGGCAAGCAACTCGAGGATGGTCGCACTCTCTCCGATTACAA 9301 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTG 24913 |||||||||||| || || || ||||||||| Sbjct 9300 CATTCAAAAGGAGTCAACCCTTCACTTGGTG 9270 Score = 109 bits (120), Expect = 5e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| |||| || || |||||||| || || || ||||| || || | | Sbjct 9707 ATGCAAATTTTTGTTAAGACCCTCACCGGTAAGACCATCACTCTCGAGGTTGAGGGTTCT 9648 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| || || || ||| |||||||| || || || || || || || Sbjct 9647 GACACCATCGAGAACGTCAAGACCAA-GATTCAAGACAAGGAGGGTATTCCACCTGACCA 9589 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||||||||||||| || || || ||||| |||||| | | | || || || || Sbjct 9588 ACAACGTTTGATCTTCGCTGGTAAGCAGCTCGAGGATGGTCGTACTCTCTCCGACTACAA 9529 Query 24883 CATTCAAAAGGAATCGACACTACA 24906 ||||||||||| || || || || Sbjct 9528 TATTCAAAAGGAGTCCACCCTCCA 9505 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || || || || || || || || | || || || | || Sbjct 9935 ATGCAAATCTTTGTAAAGACACTGACTGGCAAGACCATCACCTTGGAGGTTGAGGGTTCC 9876 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || |||| || || || ||||||||| || || || || || || || || Sbjct 9875 GATACCATCGAGAACGTCAAGACCAA-GATCCAAGATAAGGAGGGTATCCCACCTGACCA 9817 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||||| | |||||||| || || || || |||||| | | | | || || || || Sbjct 9816 ACAACGTCTCATCTTTGCTGGTAAGCAACTTGAGGATGGTCGCACCCTTTCCGACTACAA 9757 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| |||||||| || || || |||||||| Sbjct 9756 CATCCAAAAGGAGTCCACTCTCCACTTGGT 9727 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || | || ||||| || || || || || || || | | Sbjct 9251 ATGCAAATCTTTGTCAAGACCTTGACTGGTAAGACCATCACCCTTGAGGTTGAGGGTTCT 9192 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || |||| || || || ||| |||||||| || || || || |||||||| Sbjct 9191 GATACCATCGAGAACGTCAAGACCAA-GATTCAAGACAAGGAGGGTATCCCACCCGATCA 9133 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||||| | |||||||| || || || || ||||| | | | | || || || || Sbjct 9132 ACAACGTCTCATCTTTGCTGGTAAGCAACTTGAGGACGGTCGTACCCTTTCCGACTACAA 9073 Query 24883 CATTCAAAAGGAATCGACACTACA 24906 ||| |||||||| || || || || Sbjct 9072 CATCCAAAAGGAGTCCACTCTCCA 9049 >seq974 Length=18895 Score = 105 bits (116), Expect = 6e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 || ||||| || ||||| || || || || | | | ||||| | || | || || Sbjct 5039 ACAGGTAAGACCATTACCCTTGAGGTCGAGGGCTCAGACACCATCGAGAATGTCAAGGCC 4980 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||||||||| || ||||| || ||||||||||||||||||||||| || || || Sbjct 4979 AAGATCCAAGACAAGGAGGGAATCCCCCCCGATCAACAACGTTTGATCTTCGCTGGTAAG 4920 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||| ||||||| | | | | || || || ||||| || ||||| || || || ||| Sbjct 4919 CAGTTGGAGGACGGTCGTACCCTCTCTGACTACAACATCCAGAAGGAGTCAACTCTCCAC 4860 Query 24908 TTGGTGTTGCGATTGCGCGGAGGCGG 24933 | || | || | ||||| || || Sbjct 4859 CTCGTCCTCCGTCTCCGCGGTGGTGG 4834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449822343378960