Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_022096.1 Length=258139 Score E Sequences producing significant alignments: (Bits) Value seq11648 210 4e-49 seq8099 127 3e-24 seq7 93.3 7e-14 seq5294 91.5 2e-13 seq5799 87.8 3e-12 seq2167 86.0 1e-11 seq76 86.0 1e-11 >seq11648 Length=415 Score = 210 bits (232), Expect = 4e-49 Identities = 233/307 (76%), Gaps = 8/307 (3%) Strand=Plus/Minus Query 35591 GAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCGGCGTCACGTTGACGATGAT 35650 ||| ||||| |||||||| ||||||||||| || |||||||| ||||| ||||||||||| Sbjct 415 GAATTCCAGGGTCACATGCCCTTCCCACTCCGGCTCCAGCGGGGTCACATTGACGATGAT 356 Query 35651 ACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACGAGGACGTTGCGCGGAATGCG 35710 || |||||||||||||||||||| |||| |||||||| ||| || |||||| ||||| Sbjct 355 GCCGCAGCGCGCGTAGGTGCTCTTGCCCAGGCACACCACCAGGGTGTCGCGCGGGATGCG 296 Query 35711 GAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGCGGAATCAGGATGCTGTCAGC 35770 |||||| || || ||||| ||||| ||||||||||| |||||||| ||||| || | Sbjct 295 GAAGTACTCCACGGTGCGCGCCAGCGCGAAGCTGTTGGGCGGAAT---GATGCACTCGTC 239 Query 35771 CTTAACCGGCTGCAGGCACTTG---GGATCGAAGTTCTTCGGATCAACCACTGCGCTGTT 35827 || | || | | || || ||||||| ||| || || || | | | ||| Sbjct 238 GCCCACGATGTCCACGAAGCTGCCCGGGTCGAAGTGCTTGGGGTCGACGATGGTGGAGTT 179 Query 35828 GATGTTGGTGAAGACTTCCCACTCATCGGCAGCA-CGCACGTCATAACCATACGACGAGT 35886 |||||||||||| || | |||| || |||| ||||||||||| || || ||| Sbjct 178 GATGTTGGTGAACACCTTGAACTC-GCGCGAGCAGCGCACGTCATAGCCGTAGCTGGAGG 120 Query 35887 TGCCGTA 35893 ||||||| Sbjct 119 TGCCGTA 113 >seq8099 Length=224 Score = 127 bits (140), Expect = 3e-24 Identities = 127/165 (77%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 35591 GAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCGGCGTCACGTTGACGATGAT 35650 ||||||||| ||||||| |||||||| |||||||| | ||| ||||||||||||||||| Sbjct 2 GAACTCCAGCGTCACATAGCCTTCCCATTCAGGTTCGAACGGGGTCACGTTGACGATGAT 61 Query 35651 ACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACGAGGACGTTGCGCGGAATGCG 35710 || ||||| || ||||| || || | || | | | || |||||||| ||||| Sbjct 62 GCCGCAGCGTGCATAGGTCGATTTGCCGAGGCAGATCGTCAACACATTGCGCGGGATGCG 121 Query 35711 GAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGCGGAAT 35755 ||||||||||| || ||||||| ||||| ||| ||||| || Sbjct 122 GAAGTATTCGATGGTACGTGCCAATGCGAACGAGTTAGGCGGGAT 166 >seq7 Length=280949 Score = 93.3 bits (102), Expect = 7e-14 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 122773 TTAGCTCAGTTGGTTAGAGCATCTGACTTTTAATCAGAGGGTCCTGGGTTCGAGTCCCAG 122832 |||||||||||||||||||||||||||| |||||||||||||||| |||||||| || || Sbjct 124901 TTAGCTCAGTTGGTTAGAGCATCTGACTGTTAATCAGAGGGTCCTTGGTTCGAGCCCAAG 124960 Query 122833 A 122833 | Sbjct 124961 A 124961 Score = 93.3 bits (102), Expect = 7e-14 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 122773 TTAGCTCAGTTGGTTAGAGCATCTGACTTTTAATCAGAGGGTCCTGGGTTCGAGTCCCAG 122832 |||||||||||||||||||||||||||| |||||||||||||||| |||||||| || || Sbjct 125013 TTAGCTCAGTTGGTTAGAGCATCTGACTGTTAATCAGAGGGTCCTTGGTTCGAGCCCAAG 125072 Query 122833 A 122833 | Sbjct 125073 A 125073 >seq5294 Length=478 Score = 91.5 bits (100), Expect = 2e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 186128 AGTTGCTGACGCACTTGGTTGACGTGGTTGGAGTAGATATGCGCGTCGCCGAACGTGTGG 186187 || |||| ||| | |||| |||||||||||||| | |||||||||||| | || || Sbjct 433 AGCTGCTCGCGCGCCTGGTCAACGTGGTTGGAGTACAGATGCGCGTCGCCCAGGGTATGC 374 Query 186188 AACAGCTTGCCTGATGCCAGGCCGAATGCCTGTGCCAGCATGTGCGTCATGATAGAGTAG 186247 | | | ||| |||| ||| ||||| |||| |||||| || | | | |||| Sbjct 373 ACGAAGTCGCCCACGCCCAGCCCGGTGGCCTGCGCCACCATGTGGGTGAGCAGTGCGTAG 314 Query 186248 AAGCCGAAGTTAAAAGGCACGCCGAGGAAGAAATCCCCGCTACGCTGATAGAGCTTGCAG 186307 | ||| ||| || |||||||| ||||||| || ||||| ||||| || | || |||| Sbjct 313 CTGGCGATGTTGAACGGCACGCCCAGGAAGATGTCGCCGCTGCGCTGGTACAACTGGCAG 254 >seq5799 Length=219 Score = 87.8 bits (96), Expect = 3e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 122603 TTCGGGTCGTTAGCTCAGTTGGTAGAGCATGGCGCTTTTAACGCCGTGGTCGTTGGTTCG 122662 || |||||||||||||| ||||||||||| ||||||||| ||||||| |||||| Sbjct 178 TTTGGGTCGTTAGCTCACTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCG 119 Query 122663 AGTCCAACACGACCCACCAGTTT 122685 | ||| ||||||||||||| ||| Sbjct 118 AATCCCACACGACCCACCATTTT 96 >seq2167 Length=75802 Score = 86.0 bits (94), Expect = 1e-11 Identities = 52/55 (95%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 120235 TAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGATCCC 120289 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 56983 TAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCATTGGTTCGATCCC 57037 >seq76 Length=330973 Score = 86.0 bits (94), Expect = 1e-11 Identities = 52/55 (95%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 120235 TAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGATCCC 120289 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 86937 TAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCATTGGTTCGATCCC 86991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 825778644767280