Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq60 132 3e-26 seq1158 120 2e-22 seq444 109 4e-19 seq974 87.8 1e-12 >seq60 Length=27343 Score = 132 bits (146), Expect = 3e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| |||||| || ||||| |||||||| ||| |||| |||| Sbjct 11530 AGAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCCGAAAGGGTGCGACCATCC 11589 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| ||||||||||| || ||||| ||||| | || | ||||||||||| Sbjct 11590 TCAAGTTGCTTACCGGCGAAGATAAGACGTTGTTGGTCGGGGGGGATACCCTCCTTGTCT 11649 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | ||| | ||||||| || | || |||||| Sbjct 11650 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCCTCGACCTCGAGTGTGATGGTC 11709 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| || | ||||| || |||||||||||| Sbjct 11710 TTTCCTGTCAATGTCTTAACGAAGATCTGCATG 11742 >seq1158 Length=25781 Score = 120 bits (132), Expect = 2e-22 Identities = 159/218 (73%), Gaps = 12/218 (6%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| ||| |||||| |||||||| || || || || |||| |||| Sbjct 9268 AGCACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAATCGGAGAGAGTGCGACCATCC 9327 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| ||||||||||| || ||||| || || | || | |||||||| || Sbjct 9328 TCGAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGATCGGGTGGGATACCCTCCTTATC- 9386 Query 34886 TTTATTTTTTGT-TTGACG-----GATGCTATCGATTCATTGGCCTCGACATCAACGGTT 34939 || | | || || |||||| |||| ||||| | ||||||| || | ||| Sbjct 9387 TTGAATCTTGGTCTTGACGTTCTCGATGGTATCGGAAC-----CCTCGACCTCCAAGGTA 9441 Query 34940 ATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| || ||||||||||| || || |||||||| Sbjct 9442 ATTGTCTTACCAGTGAGGGTCTTGACGAAAATCTGCAT 9479 Score = 114 bits (126), Expect = 8e-21 Identities = 156/218 (72%), Gaps = 10/218 (5%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| |||||| || ||||| ||||| || ||| |||| |||| Sbjct 9724 AGAACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGACCATCC 9783 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| || || ||||| || ||||| ||||| | || | |||||||| || Sbjct 9784 TCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCAGGTGGGATACCCTCCTTATCT 9843 Query 34886 TTTATTTTTTGTTTGACG-----GATGCTATCGATTCATTGGCCTCGACATCAACGGTTA 34940 | || || |||||| |||| ||||| | |||| || || | ||| | Sbjct 9844 TGGATCTTGGTCTTGACGTTCTCGATGGTATCGGAAC-----CCTCAACCTCCAAGGTGA 9898 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||||| || || || |||||||||||||| |||||| Sbjct 9899 TGGTCTTGCCAGTCAGTGTCTTTACAAAGATTTGCATG 9936 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | |||| |||||| ||||| || ||||| || || | || |||| Sbjct 9496 AGGACGAGATGGAGGGTGGACTCCTTTTGAATATTGTAGTCGGAGAGAGTACGACCATCC 9555 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || |||||||||| ||||| ||||| | || | ||||||||||| Sbjct 9556 TCGAGCTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGAATACCCTCCTTGTC- 9614 Query 34886 TTTATTTTTTGT-TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 || | | || || |||||| | || | ||| |||| || || | || ||||| Sbjct 9615 TTGAATCTTGGTCTTGACGTTCTCGATGGTGTCAGAACCCTCAACCTCGAGAGTGATGGT 9674 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || ||||||||||| ||||| || ||||| Sbjct 9675 CTTACCGGTGAGGGTCTTAACAAAAATTTGCAT 9707 Score = 107 bits (118), Expect = 1e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | ||| |||||| || ||||| ||||| || ||| | || | || Sbjct 9040 AGGACGAGATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTACGACCGTCC 9099 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| || || ||||| || ||||| || || | || | ||||||||||| Sbjct 9100 TCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGATCGGGTGGGATACCCTCCTTGTC- 9158 Query 34886 TTTATTTTTTGT-TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 || | | || || |||||| | || | ||| |||| || |||| ||| ||||| Sbjct 9159 TTGAATCTTGGTCTTGACGTTCTCGATGGTATCAGAACCCTCAACCTCAAGGGTGATGGT 9218 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || | |||||| |||||||| ||||| Sbjct 9219 CTTACCAGTCAAGGTCTTGACAAAGATTTGCAT 9251 >seq444 Length=38654 Score = 109 bits (120), Expect = 4e-19 Identities = 155/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || || || | |||| |||||| || ||||| || || || || | || |||| Sbjct 5484 AGAACGAGATGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGAGAGAGTACGACCATCC 5425 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| ||||| ||||| || ||||| ||||| | || | ||||||||||| Sbjct 5424 TCAAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGGTCAGGTGGGATACCCTCCTTGTCT 5365 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT-TCATTGG---CCTCGACATCAACGGTTAT 34941 | || || ||||| | | ||||| || || | ||||| |||| ||| || Sbjct 5364 TGGATCTTGGTCTTGAC----GTTCTCGATAGTATCGGAACCTTCGACCTCAAGGGTGAT 5309 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || ||||||||||| || ||||| ||||| Sbjct 5308 GGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 5273 Score = 109 bits (120), Expect = 4e-19 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| ||| |||||| || ||||| ||||| || ||| | || |||| Sbjct 5712 AGAACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGACCATCC 5653 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| || || ||||| || ||||| ||||| | || | ||||||||||| Sbjct 5652 TCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCAGGTGGGATACCCTCCTTGTC- 5594 Query 34886 TTTATTTTTTGT-TTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | | || || ||||| || || || | ||| ||||||| || | || ||| Sbjct 5593 TTGAATCTTGGTCTTGAC--ATTCTCAATGGTGTCAGAACCCTCGACCTCGAGAGTGATG 5536 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || | |||||| || ||||| ||||| Sbjct 5535 GTCTTACCAGTCAAGGTCTTGACGAAGATTTGCAT 5501 Score = 105 bits (116), Expect = 4e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | ||| |||||| || ||||| ||||| || || | || |||| Sbjct 5256 AGGACGAGATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGACCATCC 5197 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || |||||||| || ||||| ||||| | || | || |||||||| Sbjct 5196 TCGAGCTGCTTACCAGCGAAGATGAGACGTTGTTGGTCAGGTGGGATACCTTCCTTGTCT 5137 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || ||||| || || || | ||| ||||||| |||| || |||| Sbjct 5136 TGGATCTTGGTCTTGAC--ATTCTCAATGGTGTCAGAACCCTCGACCTCAAGAGTGATGG 5079 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || ||||||||||| || ||||| ||||| Sbjct 5078 TCTTACCAGTGAGGGTCTTAACGAAGATTTGCAT 5045 Score = 100 bits (110), Expect = 2e-16 Identities = 153/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| ||| |||||| || ||||| || || || || | || |||| Sbjct 5028 AGAACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGAGAGAGTACGACCATCC 4969 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| ||||| ||||| || ||||| ||||| | || | ||||||||||| Sbjct 4968 TCAAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGGTCAGGTGGAATTCCCTCCTTGTCT 4909 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT-TCATTGG---CCTCGACATCAACGGTTAT 34941 | || || ||||| | | ||||| || || ||||||| || | ||| || Sbjct 4908 TGGATCTTGGTCTTGAC----GTTCTCGATAGTATCGGAACCCTCGACCTCCAAGGTAAT 4853 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || || || || |||||||| ||||| Sbjct 4852 AGTCTTGCCTGTCAGAGTTTTAACAAAGATTTGCAT 4817 >seq974 Length=18895 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/191 (71%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | || ||||||||| ||||| ||||| || ||| | || | || Sbjct 4852 AGGACGAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGACCGTCC 4911 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| || |||||||||| ||||| || || | || | ||||||||||| Sbjct 4912 TCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGATCGGGGGGGATTCCCTCCTTGTCT 4971 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || ||||| || || || | || | ||||||| |||| ||| |||| Sbjct 4972 TGGATCTTGGCCTTGAC--ATTCTCGATGGTGTCTGAGCCCTCGACCTCAAGGGTAATGG 5029 Query 34944 TCTTTCCCGTG 34954 |||| || ||| Sbjct 5030 TCTTACCTGTG 5040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325639681743458