Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_022750.1 Length=33628 Score E Sequences producing significant alignments: (Bits) Value seq2574 257 4e-64 seq3038 250 5e-62 seq3006 127 4e-25 seq12163 104 5e-18 seq4471 98.7 2e-16 seq3418 91.5 3e-14 >seq2574 Length=1324 Score = 257 bits (284), Expect = 4e-64 Identities = 171/189 (90%), Gaps = 1/189 (1%) Strand=Plus/Minus Query 26365 CAACAGCGATCCTGGATCGGCTGCTACATCACTCAACCACGCTGAATATCAAAGGAGAGA 26424 |||||||| |||||||| | ||||| ||||||||||||||||||||||||||||||||| Sbjct 516 CAACAGCGCTCCTGGATTGACTGCTGCATCACTCAACCACGCTGAATATCAAAGGAGAGC 457 Query 26425 GTTACCGGTTAAAAGAGAAACGTAAAGCTGGAGTGCTGACCAAAAACACAACGCCAATCA 26484 |||||||||||||||||||||||||||||| ||| ||||| ||||| ||||||| ||| Sbjct 456 GTTACCGGTTAAAAGAGAAACGTAAAGCTGTGGTGATGACCCAAAACGCAACGCCTGTCA 397 Query 26485 GTGATGATGAAATGGTGGAAAGCGGACAGCATCAGTAACGAAAGTAT-TTAGCGGGCATG 26543 |||| |||||||||||| |||||||||||||||||||||| |||||| |||||||| | | Sbjct 396 GTGAGGATGAAATGGTGAAAAGCGGACAGCATCAGTAACGGAAGTATCTTAGCGGGTACG 337 Query 26544 AAAATGGCA 26552 ||||||||| Sbjct 336 AAAATGGCA 328 Score = 233 bits (258), Expect = 4e-57 Identities = 174/203 (86%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 24752 CAGAGAATGTCTGGAATAGCGAGGTTATCTTCGCGGAGATTAAGGCAATGGGTTATACGG 24811 ||||||||||| ||||| |||||||||||| |||||||||||||||||||| ||||||| Sbjct 715 CAGAGAATGTCCGGAATGACGAGGTTATCTTTGCGGAGATTAAGGCAATGGGCTATACGG 656 Query 24812 GCGGACGTTCCATGCTGCGTTACTACATCCAGCCCAAACGTAAAATGCGTCCGTCAAAAA 24871 || || ||||||||| |||||||||||| |||||| |||||||||||| |||||||||| Sbjct 655 GCCGATGTTCCATGCCGCGTTACTACATTCAGCCCGGACGTAAAATGCGCCCGTCAAAAA 596 Query 24872 GAACAGTTCGCTTCGAAACTCAGCCTGGATACCA--GCTCCAGCATGACTGGGGCGAAGT 24929 |||| |||||||||||||||||||| |||||||| |||| || | ||| ||||| Sbjct 595 GAACGGTTCGCTTCGAAACTCAGCCAGGATACCACCTCTCCGCCACACCCGGGAAGAAGT 536 Query 24930 TGAGGTGGAGGTTGCCGGGCAAC 24952 ||| ||| ||||||||| |||| Sbjct 535 TGATATGGTGGTTGCCGGACAAC 513 >seq3038 Length=4243 Score = 250 bits (276), Expect = 5e-62 Identities = 175/198 (88%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 24454 TCAGCGCCAGTGATATAAGACGGTAATTCGCCATTTGGATTGTC-CGCTCCACCCAACAT 24512 ||||||||| |||||||||||||||| || ||||||||||| | || |||| ||||||| Sbjct 3833 TCAGCGCCAATGATATAAGACGGTAAATCACCATTTGGATTAGCTCGATCCATCCAACAT 3892 Query 24513 GTTGTTTCCTTAAGGTTCTCACACCAGAAAGGACATCAACATGCTGAGCAGAGAGGACTT 24572 |||||||||| ||||||||||| |||||||||||||||||| ||||||||||| ||||| Sbjct 3893 GTTGTTTCCTGGAGGTTCTCACATCAGAAAGGACATCAACATACTGAGCAGAGAAGACTT 3952 Query 24573 TTACATGATAAAGCAAATGCGCCAGCAGGGCGCGTACATCGTCGATATTGCGACTCAGAT 24632 ||| ||| |||||||||||||| ||||||||| |||||| |||||||||||||||||| | Sbjct 3953 TTAGATGGTAAAGCAAATGCGCTAGCAGGGCGAGTACATTGTCGATATTGCGACTCAGGT 4012 Query 24633 TGGTTGCTCTGAACGGAC 24650 ||||| ||||| || || Sbjct 4013 TGGTTATTCTGAGCGAAC 4030 >seq3006 Length=629 Score = 127 bits (140), Expect = 4e-25 Identities = 188/264 (71%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 16630 ATCGACCAGGAGCAGGGCTGGCATAAAACGCTGTCCAACGTCGGGGTGAACGGTGTTACC 16689 ||||| || |||| ||||||||||| ||||||||||||| | || ||| || ||| Sbjct 6 ATCGATGAGCAGCAAGGCTGGCATAAGTCGCTGTCCAACGTGGCCGTAGCCGGCGTGACC 65 Query 16690 GGCATCAGCGCCTCTGTATTCTGGGATTTGCAGGAGTCCGGC-ACCGATGCTGACCTGTT 16748 ||||||||| || ||||| ||||||| |||||| ||||| || | | || | Sbjct 66 GGCATCAGCCGGGACGTCCATTGGGACCTGCAGGA-TCCGGCGACCGACGCCGGCATGCT 124 Query 16749 GAACGAGTCAGGTGTCACAACGCTGATTCGCCGTGACGGTTTCCGCTTCTGGGGTAACCG 16808 || | | | | |||| |||||||| | |||| | | |||||||| || Sbjct 125 CAATGCCGCCGATATCACCACGCTGATCAACTCCAACGGGTACAAGTTCTGGGGATCGCG 184 Query 16809 TACCTGCTCTGATGACCCGCTGTTCCTCTTTGAAAACTACACCCGCACCGCGCAGGTGCT 16868 |||||| ||||| |||||||| ||| || | || ||||||||| |||||| | || Sbjct 185 CACCTGCAGCGATGAGCCGCTGTTTGCCTTCGAGACCTCCACCCGCACGGCGCAGATCCT 244 Query 16869 GGCCGACACGATGGCTGAGGCGCA 16892 ||||||||| || || |||||||| Sbjct 245 GGCCGACACCATCGCCGAGGCGCA 268 >seq12163 Length=619 Score = 104 bits (114), Expect = 5e-18 Identities = 202/291 (69%), Gaps = 7/291 (2%) Strand=Plus/Plus Query 1638 GCAAAGTCCATGCCTTTCCACTGGTGACGTTCAAGGATCCTGAATTTGCCACCGGCCACC 1697 || ||||||||||| || |||||||||| || || | | ||| |||||||||| ||| Sbjct 7 GCGAAGTCCATGCCCTTGAACTGGTGACGCTCCAGCACGCGGAACTTGCCACCGGGCACT 66 Query 1698 ACCGGCGGTGCCAGCACCACGCATCCGGCGCTGTCGCCACGGTGTGACGGGTCGTAACCA 1757 ||||| |||| | |||| |||||||||||||| | | ||||||||| ||| Sbjct 67 TGGGGCGGCGCCACAATCACGATGCCGGCGCTGTCGCCCGTCTCGGCCGGGTCGTACCCA 126 Query 1758 ATCCATACCGGGCGGGAGCCGAACGGATTTGCGGC-AAACGGCGCA--TAGTCTTCCCA- 1813 ||||| |||| |||| ||| | || ||| || ||| | | | | |||| Sbjct 127 ATCCACACCGCGCGGTCGCCATATGGGCGCATGGCGAAGGGGCTGAACTCGCCGGCCCAC 186 Query 1814 TTCTTCCAGCGTGTCGACCATACAGCGTTGCAGC-TCCTCGAACGGGAACACCGACGCCT 1872 | | ||||| |||| ||| || | |||||| || || | ||||||||| || Sbjct 187 TCCACCCAGC-TGTCCACCTGGCACGGCTGCAGCATCGTC-AGCGGGAACACGCTGGCGC 244 Query 1873 TGTCGTCAACAAATTCACACATGAACAGGTTTTTAAAATCGTCGGCGCTGT 1923 ||||||| || || || ||||| | |||||| || || |||||||||| Sbjct 245 TGTCGTCCACGAACTCGCACATCAGCAGGTTGGCGAATTCCTCGGCGCTGT 295 >seq4471 Length=3422 Score = 98.7 bits (108), Expect = 2e-16 Identities = 63/69 (91%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 24669 ATACCCTGAACCGCCAGCCAGAAAGACCCGCCACAAAATGGTTAAGCTGAAACCGTTTAT 24728 || |||||||||||||||||||||||| ||||||||| || |||||||||| ||||||| Sbjct 69 ATCCCCTGAACCGCCAGCCAGAAAGACTGGCCACAAAAGGGGTAAGCTGAAATCGTTTAT 10 Query 24729 GGATTACAT 24737 ||||||||| Sbjct 9 GGATTACAT 1 >seq3418 Length=506 Score = 91.5 bits (100), Expect = 3e-14 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 582 GGCATCGGTGACGTACATGATGTATCCGGCATGTGCGCCGTTTTCGTAATACTTGCGGCG 641 || |||||| | ||| | |||| | ||||| || | |||||| | ||| |||||||| || Sbjct 263 GGAATCGGTCAGGTAGAGGATGAAGCCGGCGTGCGAGCCGTTGTTGTAGTACTTGCGCCG 204 Query 642 GAACAGCGTGGCCGACTCATTCAGCCAGGCAGAGTTAAGGGCGCTGAGATATTCCGGCAG 701 |||||||||||||||||| || ||| || | | | ||| | | || ||||| Sbjct 203 GAACAGCGTGGCCGACTCGTTGAGCAGCGCGGCCTGCACGGCCGGCATCCACTCGGGCAG 144 Query 702 GCCGTACAGCTCCTGATTAATATCCGGCTCCAGCAGGTGAAACAC 746 |||||||| |||||| | ||| | |||| |||| || |||| Sbjct 143 GCCGTACACCTCCTGGTCTGCATCGGACTCCCGCAGCTGGTACAC 99 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107470918947560